Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER93338 | Sorghum | plastid | 94.19 | 97.12 |
| Zm00001d034361_P001 | Maize | cytosol, plastid | 93.37 | 96.51 |
| KRH21073 | Soybean | cytosol | 31.05 | 93.36 |
| TraesCS5A01G425300.1 | Wheat | cytosol | 77.09 | 93.25 |
| TraesCS5B01G427400.1 | Wheat | cytosol | 83.72 | 89.66 |
| TraesCS5D01G433700.3 | Wheat | cytosol, plastid | 85.81 | 88.92 |
| HORVU5Hr1G103580.2 | Barley | plastid | 86.05 | 88.84 |
| KRH11182 | Soybean | cytosol, plastid | 74.42 | 81.22 |
| GSMUA_Achr4P22850_001 | Banana | cytosol | 75.7 | 81.07 |
| KRH58640 | Soybean | cytosol | 72.33 | 80.26 |
| VIT_10s0003g03710.t01 | Wine grape | cytosol | 74.3 | 79.68 |
| KRH42547 | Soybean | cytosol | 71.05 | 79.45 |
| Solyc02g021470.2.1 | Tomato | cytosol, nucleus, plastid | 72.33 | 79.24 |
| CDX77644 | Canola | cytosol | 70.0 | 78.49 |
| CDY33461 | Canola | cytosol | 69.42 | 78.45 |
| Bra025031.1-P | Field mustard | cytosol | 69.19 | 78.29 |
| CDY43957 | Canola | cytosol | 70.23 | 77.84 |
| Bra022023.1-P | Field mustard | plastid | 70.93 | 77.71 |
| CDX87735 | Canola | cytosol | 70.23 | 77.44 |
| AT5G46210.1 | Thale cress | cytosol | 70.35 | 76.39 |
| CDY35152 | Canola | plastid | 69.65 | 76.21 |
| CDY03235 | Canola | plastid | 70.0 | 76.2 |
| Bra017569.1-P | Field mustard | plastid | 69.53 | 76.08 |
| Solyc02g070460.2.1 | Tomato | plastid | 70.58 | 75.69 |
| GSMUA_Achr7P01270_001 | Banana | cytosol | 76.05 | 74.74 |
| KRH21072 | Soybean | plastid | 40.12 | 71.43 |
| Zm00001d018043_P001 | Maize | cytosol | 34.53 | 40.35 |
| Zm00001d049487_P001 | Maize | cytosol | 33.49 | 38.97 |
| Zm00001d024466_P001 | Maize | cytosol | 33.26 | 38.75 |
| Zm00001d010858_P007 | Maize | cytosol | 26.63 | 30.57 |
| Zm00001d024855_P007 | Maize | cytosol | 26.51 | 29.42 |
| Zm00001d042193_P001 | Maize | cytosol | 6.4 | 18.84 |
Protein Annotations
| Gene3D:1.10.10.10 | Gene3D:1.10.10.2620 | Gene3D:1.20.1310.10 | EntrezGene:103625822 | MapMan:19.2.2.8.3.1 | MapMan:26.1.1.3.1 |
| UniProt:A0A1D6GG24 | ProteinID:AQK62506.1 | InterPro:Cullin_CS | InterPro:Cullin_N | InterPro:Cullin_homology | InterPro:Cullin_homology_sf |
| InterPro:Cullin_neddylation_domain | InterPro:Cullin_repeat-like_dom_sf | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006511 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0019538 | GO:GO:0031461 | GO:GO:0031625 | InterPro:IPR016158 | InterPro:IPR036388 |
| PFAM:PF00888 | PFAM:PF10557 | ScanProsite:PS01256 | PFscan:PS50069 | PANTHER:PTHR11932 | PANTHER:PTHR11932:SF27 |
| SMART:SM00182 | SMART:SM00884 | SUPFAM:SSF46785 | SUPFAM:SSF74788 | SUPFAM:SSF75632 | UniParc:UPI000842B745 |
| InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | EnsemblPlantsGene:Zm00001d013116 | EnsemblPlants:Zm00001d013116_P002 | EnsemblPlants:Zm00001d013116_T002 | SEG:seg |
Description
Cullin-4
Coordinates
chr5:-:4888300..4898094
Molecular Weight (calculated)
97414.1 Da
IEP (calculated)
8.823
GRAVY (calculated)
-0.268
Length
860 amino acids
Sequence
(BLAST)
(BLAST)
001: MSQSYAAAAS KRPFSSPTTS PSPTSSPATP LMKKAKHPAA ASSSSVGTVE KNGIQLDTVA AAMGGGRTNG EEDADMVLVN QDKLPAPSVP ASAGVAANLF
101: RKKATLPQPS TSARKPLRIK IALCLNAILA ALHSLGQPKL PKNFEEDTWS ILKDAITAIF LKQKLSCDVE KLYQAAGDLC LHKLGANLYD RIKKECGIHI
201: AEKISALVGQ SPDLVVFLSL VQRTWQDFCD QMLIIRGIAL LLDVKYVKNV ANICSVWDMG LQLFRKHLSL STEIEHKTVT GLLRLIESER LGEAIDRTLL
301: SHLLKMLTAL GMYSESFEKP FLECTSEFYA TEGVRYMQQS DIPDYLKHVE SRLQEEHERC ILYLEANTRK PLIATTEKQL LERHTSAIIE KGFTMLMDAN
401: RINDLSRMYN LFQRVNAVEL LKLALSSYIR ATGQGIIMDE EKDRELVPFL LDFKASLDKI LEESFAKNEA FSNTIKDSFE HLINLRQNRP AELIAKFLDE
501: KLRAGNKGTS EEELEGILDK VLVLFRFIQI WGSFSSNMHY VRVKGKDVFE AFYKKDLAKR LLLGKSASID AEKSMITKLK TECGSQFTNK LEGMFKDIEL
601: SKEINDSFRQ SSQARTKLPS GIEMSVHVLT TGYWPTYPPM DVKLPHELNV YQDIFKEFYL SKYSGRRLMW QNSLGHCVLK ADFPKGKKEL AVSLFQSVVL
701: MLFNDAQKLS FIDIKDSTGI EDKELRRTLQ SLACGKVRVL QKIPKGRDVE DKDEFVFNED FSAPLYRIKV NAIQMKETVE ENTSTTERVF QDRQYQVDAA
801: IVRIMKTRKV LSHTLLITEL YQQLKFPVKP ADIKKRIESL IDREYLERDR SNPQIYNYLA
101: RKKATLPQPS TSARKPLRIK IALCLNAILA ALHSLGQPKL PKNFEEDTWS ILKDAITAIF LKQKLSCDVE KLYQAAGDLC LHKLGANLYD RIKKECGIHI
201: AEKISALVGQ SPDLVVFLSL VQRTWQDFCD QMLIIRGIAL LLDVKYVKNV ANICSVWDMG LQLFRKHLSL STEIEHKTVT GLLRLIESER LGEAIDRTLL
301: SHLLKMLTAL GMYSESFEKP FLECTSEFYA TEGVRYMQQS DIPDYLKHVE SRLQEEHERC ILYLEANTRK PLIATTEKQL LERHTSAIIE KGFTMLMDAN
401: RINDLSRMYN LFQRVNAVEL LKLALSSYIR ATGQGIIMDE EKDRELVPFL LDFKASLDKI LEESFAKNEA FSNTIKDSFE HLINLRQNRP AELIAKFLDE
501: KLRAGNKGTS EEELEGILDK VLVLFRFIQI WGSFSSNMHY VRVKGKDVFE AFYKKDLAKR LLLGKSASID AEKSMITKLK TECGSQFTNK LEGMFKDIEL
601: SKEINDSFRQ SSQARTKLPS GIEMSVHVLT TGYWPTYPPM DVKLPHELNV YQDIFKEFYL SKYSGRRLMW QNSLGHCVLK ADFPKGKKEL AVSLFQSVVL
701: MLFNDAQKLS FIDIKDSTGI EDKELRRTLQ SLACGKVRVL QKIPKGRDVE DKDEFVFNED FSAPLYRIKV NAIQMKETVE ENTSTTERVF QDRQYQVDAA
801: IVRIMKTRKV LSHTLLITEL YQQLKFPVKP ADIKKRIESL IDREYLERDR SNPQIYNYLA
001: MSLPTKRSTF SAASASDDSS YSSPPMKKAK NDLHHSPQHP NTADKVVGFH MEEDPTPAAA NLSRKKATLP QPTKKFVIKL NKAKPTLPTN FEENTWEKLQ
101: SAIRAIFLKK KISFDLESLY QAVDNLCLHK LDGKLYDQIE KECEEHISAA LQSLVGQNTD LTVFLSRVEK CWQDFCDQML MIRSIALTLD RKYVIQNPNV
201: RSLWEMGLQL FRKHLSLAPE VEQRTVKGLL SMIEKERLAE AVNRTLLSHL LKMFTALGIY MESFEKPFLE GTSEFYAAEG MKYMQQSDVP EYLKHVEGRL
301: HEENERCILY IDAVTRKPLI TTVERQLLER HILVVLEKGF TTLMDGRRTE DLQRMQTLFS RVNALESLRQ ALSSYVRKTG QKIVMDEEKD KDMVQSLLDF
401: KASLDIIWEE SFYKNESFGN TIKDSFEHLI NLRQNRPAEL IAKFLDEKLR AGNKGTSEEE LESVLEKVLV LFRFIQGKDV FEAFYKKDLA KRLLLGKSAS
501: IDAEKSMISK LKTECGSQFT NKLEGMFKDI ELSKEINESF KQSSQARTKL PSGIEMSVHV LTTGYWPTYP PMDVKLPHEL NVYQDIFKEF YLSKYSGRRL
601: MWQNSLGHCV LKADFSKGKK ELAVSLFQAV VLMLFNDAMK LSFEDIKDST SIEDKELRRT LQSLACGKVR VLQKNPKGRD VEDGDEFEFN DEFAAPLYRI
701: KVNAIQMKET VEENTSTTER VFQDRQYQID AAIVRIMKTR KVLSHTLLIT ELFQQLKFPI KPADLKKRIE SLIDREYLER EKSNPQIYNY LA
101: SAIRAIFLKK KISFDLESLY QAVDNLCLHK LDGKLYDQIE KECEEHISAA LQSLVGQNTD LTVFLSRVEK CWQDFCDQML MIRSIALTLD RKYVIQNPNV
201: RSLWEMGLQL FRKHLSLAPE VEQRTVKGLL SMIEKERLAE AVNRTLLSHL LKMFTALGIY MESFEKPFLE GTSEFYAAEG MKYMQQSDVP EYLKHVEGRL
301: HEENERCILY IDAVTRKPLI TTVERQLLER HILVVLEKGF TTLMDGRRTE DLQRMQTLFS RVNALESLRQ ALSSYVRKTG QKIVMDEEKD KDMVQSLLDF
401: KASLDIIWEE SFYKNESFGN TIKDSFEHLI NLRQNRPAEL IAKFLDEKLR AGNKGTSEEE LESVLEKVLV LFRFIQGKDV FEAFYKKDLA KRLLLGKSAS
501: IDAEKSMISK LKTECGSQFT NKLEGMFKDI ELSKEINESF KQSSQARTKL PSGIEMSVHV LTTGYWPTYP PMDVKLPHEL NVYQDIFKEF YLSKYSGRRL
601: MWQNSLGHCV LKADFSKGKK ELAVSLFQAV VLMLFNDAMK LSFEDIKDST SIEDKELRRT LQSLACGKVR VLQKNPKGRD VEDGDEFEFN DEFAAPLYRI
701: KVNAIQMKET VEENTSTTER VFQDRQYQID AAIVRIMKTR KVLSHTLLIT ELFQQLKFPI KPADLKKRIE SLIDREYLER EKSNPQIYNY LA
Arabidopsis Description
CUL4Cullin-4 [Source:UniProtKB/Swiss-Prot;Acc:Q8LGH4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.