Factsheet for Zm00001d034361_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d002027_P002
Zm00001d002933_P014
Zm00001d003685_P001
Zm00001d008597_P001
Zm00001d009745_P023
Zm00001d018207_P001
Zm00001d021904_P001
Zm00001d025407_P001
Zm00001d026691_P004
Zm00001d027974_P002
Zm00001d028143_P002
Zm00001d028517_P001
Zm00001d033309_P003
Zm00001d035130_P001
Zm00001d039165_P046
Zm00001d042794_P003
Zm00001d046662_P001
Zm00001d049167_P001
Zm00001d049652_P001
Zm00001d050298_P001
Zm00001d052138_P004

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G46210.1	Zm00001d042794_P003	AT1G19750.1	20622147
AT5G46210.1	Zm00001d002027_P002	AT1G71230.1	16844902
AT5G46210.1	Zm00001d027974_P002	AT2G02560.1	16844902
AT5G46210.1	Zm00001d046662_P001	AT2G02560.1	16844902
AT5G46210.1	Zm00001d049167_P001	AT2G02560.1	16844902
AT5G46210.1	Zm00001d050298_P001	AT2G02560.1	16844902
AT5G46210.1	Zm00001d018207_P001	AT2G32950.1	16844902
AT5G46210.1	Zm00001d052138_P004	AT2G32950.1	16844902
AT5G46210.1	Zm00001d021904_P001	AT3G13550.1	16844902
AT5G46210.1	Zm00001d009745_P023	AT4G05420.1	16792691
AT5G46210.1	Zm00001d039165_P046	AT4G05420.1	16792691
AT5G46210.1	Zm00001d009745_P023	AT4G05420.1	16844902
AT5G46210.1	Zm00001d039165_P046	AT4G05420.1	16844902
AT5G46210.1	Zm00001d009745_P023	AT4G05420.1	18223036
AT5G46210.1	Zm00001d039165_P046	AT4G05420.1	18223036
AT5G46210.1	Zm00001d009745_P023	AT4G05420.1	18551167
AT5G46210.1	Zm00001d039165_P046	AT4G05420.1	18551167
AT5G46210.1	Zm00001d003685_P001	AT4G14110.1	16844902
AT5G46210.1	Zm00001d025407_P001	AT4G14110.1	16844902
AT5G46210.1	Zm00001d033309_P003	AT4G15900.1	18223036
AT5G46210.1	Zm00001d009745_P023	AT4G21100.1	16792691
AT5G46210.1	Zm00001d039165_P046	AT4G21100.1	16792691
AT5G46210.1	Zm00001d002933_P014	AT4G31160.1	18552200
AT5G46210.1	Zm00001d026691_P004	AT4G31160.1	18552200
AT5G46210.1	Zm00001d028517_P001	AT5G14250.1	16844902
AT5G46210.1	Zm00001d035130_P001	AT5G14250.1	16844902
AT5G46210.1	Zm00001d049652_P001	AT5G14250.1	16844902
AT5G46210.1	Zm00001d028143_P002	AT5G42970.1	16844902
AT5G46210.1	Zm00001d008597_P001	AT5G58760.1	18551167

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER93338	Sorghum	plastid	97.84	97.6
Zm00001d013116_P002	Maize	plastid	96.51	93.37
KRH21073	Soybean	cytosol	32.09	93.36
TraesCS5A01G425300.1	Wheat	cytosol	79.57	93.11
TraesCS5B01G427400.1	Wheat	cytosol	86.78	89.91
HORVU5Hr1G103580.2	Barley	plastid	89.3	89.2
TraesCS5D01G433700.3	Wheat	cytosol, plastid	88.94	89.16
GSMUA_Achr4P22850_001	Banana	cytosol	78.61	81.44
KRH11182	Soybean	cytosol, plastid	76.68	80.96
KRH58640	Soybean	cytosol	74.76	80.26
KRH42547	Soybean	cytosol	73.68	79.71
VIT_10s0003g03710.t01	Wine grape	cytosol	76.56	79.43
Solyc02g021470.2.1	Tomato	cytosol, nucleus, plastid	74.52	78.98
CDX77644	Canola	cytosol	72.24	78.36
CDY33461	Canola	cytosol	71.63	78.32
Bra025031.1-P	Field mustard	cytosol	71.39	78.16
CDY43957	Canola	cytosol	72.6	77.84
Bra022023.1-P	Field mustard	plastid	73.2	77.58
CDX87735	Canola	cytosol	72.6	77.44
AT5G46210.1	Thale cress	cytosol	72.6	76.26
CDY35152	Canola	plastid	72.0	76.21
CDY03235	Canola	plastid	72.36	76.2
Bra017569.1-P	Field mustard	plastid	71.88	76.08
Solyc02g070460.2.1	Tomato	plastid	72.84	75.56
GSMUA_Achr7P01270_001	Banana	cytosol	78.61	74.74
KRH21072	Soybean	plastid	41.71	71.84
Zm00001d018043_P001	Maize	cytosol	35.46	40.08
Zm00001d049487_P001	Maize	cytosol	34.62	38.97
Zm00001d024466_P001	Maize	cytosol	34.38	38.75
Zm00001d010858_P007	Maize	cytosol	27.52	30.57
Zm00001d024855_P007	Maize	cytosol	27.16	29.16
Zm00001d042193_P001	Maize	cytosol	6.61	18.84

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.2620	Gene3D:1.20.1310.10	MapMan:19.2.2.8.3.1	MapMan:26.1.1.3.1	UniProt:A0A1D6L6V2
InterPro:Cullin_CS	InterPro:Cullin_N	InterPro:Cullin_homology	InterPro:Cullin_homology_sf	InterPro:Cullin_neddylation_domain	InterPro:Cullin_repeat-like_dom_sf
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538
GO:GO:0031461	GO:GO:0031625	InterPro:IPR016158	InterPro:IPR036388	ProteinID:ONM10027.1	PFAM:PF00888
PFAM:PF10557	ScanProsite:PS01256	PFscan:PS50069	PANTHER:PTHR11932	PANTHER:PTHR11932:SF27	SMART:SM00182
SMART:SM00884	SUPFAM:SSF46785	SUPFAM:SSF74788	SUPFAM:SSF75632	UniParc:UPI0008443EBD	InterPro:WH-like_DNA-bd_sf
InterPro:WH_DNA-bd_sf	EnsemblPlantsGene:Zm00001d034361	EnsemblPlants:Zm00001d034361_P001	EnsemblPlants:Zm00001d034361_T001	SEG:seg	:

Description

Cullin-4

Coordinates

chr1:+:290780826..290793772

Molecular Weight (calculated)

94326.1 Da

IEP (calculated)

8.093

GRAVY (calculated)

-0.321

Length

832 amino acids

Sequence
(BLAST)

001: MSQPHAAAPA SKRPFSSTTT SPSPTSSPAT PLMKKAKHPA ATASSVGTVE KNGIHLDTAA AAATGGGRTN GEEDAEMVLV DQDELPAPSA PASAGVAANL
101: FRKKATLPQP STSARKPLRI RIGQPKLPKN FEEDTWTILK DAITAIFLKQ KLSCDVEKLY QAAGDLCLHK LGANLYERIK KECEIHIAEK ISALVGQSPD
201: LVVFLSLVQR TWQDFCDQML IIRGIALLLD VKYVKNVANI CSVWDMGLQL FRKHLSLSPE IEHKTVTGLL RLIESERLGE AIDRTLLSHL LKMLTALGMY
301: SESFEKPFLE CTSEFYATEG VKYMQQSDIP DYLKHVESRL QEEHERCILY LEANTRKPLI ATTETQLLDR HTSAIIEKGF AMLMDANRIN DLLRMYNLFQ
401: RVNAVELLKQ ALSSYIRATG QGIIMDEEKD RELVPFLLDF KASLDKILEE SFAKNEAFSN TMKDSFEHLI NLRQNRPAEL IAKFLDEKLR AGNKGTSEEE
501: LEGILDKVLV MFRFIQGKDV FEAFYKKDLA KRLLLGKSAS IDAEKSMITK LKTECGSQFT NKLEGMFKDI ELSKEINDSF RQSSQARTKL PSGIEMSVHV
601: LTTGYWPTYP PMDVKLPHEL NVYQDIFKEF YLSKYSGRRL MWQNSLGHCV LKADFPKGKK ELAVSLFQSV VLMLFNDAQK LSFLDIKDST GIEDKELRRT
701: LQSLACGKVR VLQKIPKGRD VEDKDDFVFN EDFSAPLYRI KVNAIQMKET VEENTSTTER VFQDRQYQVD AAIVRIMKTR KVLSHTLLIT ELYQQLKFPV
801: KPADIKKRIE SLIDREYLER DRSNPQIYNY LA

Best Arabidopsis Sequence Match ( AT5G46210.1 )
(BLAST)

001: MSLPTKRSTF SAASASDDSS YSSPPMKKAK NDLHHSPQHP NTADKVVGFH MEEDPTPAAA NLSRKKATLP QPTKKFVIKL NKAKPTLPTN FEENTWEKLQ
101: SAIRAIFLKK KISFDLESLY QAVDNLCLHK LDGKLYDQIE KECEEHISAA LQSLVGQNTD LTVFLSRVEK CWQDFCDQML MIRSIALTLD RKYVIQNPNV
201: RSLWEMGLQL FRKHLSLAPE VEQRTVKGLL SMIEKERLAE AVNRTLLSHL LKMFTALGIY MESFEKPFLE GTSEFYAAEG MKYMQQSDVP EYLKHVEGRL
301: HEENERCILY IDAVTRKPLI TTVERQLLER HILVVLEKGF TTLMDGRRTE DLQRMQTLFS RVNALESLRQ ALSSYVRKTG QKIVMDEEKD KDMVQSLLDF
401: KASLDIIWEE SFYKNESFGN TIKDSFEHLI NLRQNRPAEL IAKFLDEKLR AGNKGTSEEE LESVLEKVLV LFRFIQGKDV FEAFYKKDLA KRLLLGKSAS
501: IDAEKSMISK LKTECGSQFT NKLEGMFKDI ELSKEINESF KQSSQARTKL PSGIEMSVHV LTTGYWPTYP PMDVKLPHEL NVYQDIFKEF YLSKYSGRRL
601: MWQNSLGHCV LKADFSKGKK ELAVSLFQAV VLMLFNDAMK LSFEDIKDST SIEDKELRRT LQSLACGKVR VLQKNPKGRD VEDGDEFEFN DEFAAPLYRI
701: KVNAIQMKET VEENTSTTER VFQDRQYQID AAIVRIMKTR KVLSHTLLIT ELFQQLKFPI KPADLKKRIE SLIDREYLER EKSNPQIYNY LA

Arabidopsis Description

CUL4Cullin-4 [Source:UniProtKB/Swiss-Prot;Acc:Q8LGH4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.