Factsheet for Bra017569.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 3
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra005541.1-P
Bra006246.1-P
Bra006326.1-P
Bra010248.1-P
Bra012753.1-P
Bra020355.1-P
Bra020884.1-P
Bra023453.1-P
Bra024021.1-P
Bra024815.1-P
Bra026586.1-P
Bra027422.1-P
Bra029577.1-P
Bra032760.1-P
Bra032850.1-P
Bra033654.1-P
Bra035336.1-P
Bra038444.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G46210.1	Bra032850.1-P	AT1G19750.1	20622147
AT5G46210.1	Bra024815.1-P	AT2G02560.1	16844902
AT5G46210.1	Bra026586.1-P	AT2G02560.1	16844902
AT5G46210.1	Bra005541.1-P	AT2G32950.1	16844902
AT5G46210.1	Bra027422.1-P	AT3G13550.1	16844902
AT5G46210.1	Bra029577.1-P	AT4G05420.1	16792691
AT5G46210.1	Bra029577.1-P	AT4G05420.1	16844902
AT5G46210.1	Bra029577.1-P	AT4G05420.1	18223036
AT5G46210.1	Bra029577.1-P	AT4G05420.1	18551167
AT5G46210.1	Bra032760.1-P	AT4G14110.1	16844902
AT5G46210.1	Bra038444.1-P	AT4G14110.1	16844902
AT5G46210.1	Bra012753.1-P	AT4G15900.1	18223036
AT5G46210.1	Bra020884.1-P	AT4G21100.1	16792691
AT5G46210.1	Bra010248.1-P	AT4G31160.1	18552200
AT5G46210.1	Bra024021.1-P	AT4G31160.1	18552200
AT5G46210.1	Bra006246.1-P	AT5G14250.1	16844902
AT5G46210.1	Bra006326.1-P	AT5G14250.1	16844902
AT5G46210.1	Bra023453.1-P	AT5G14250.1	16844902
AT5G46210.1	Bra033654.1-P	AT5G42970.1	16844902
AT5G46210.1	Bra035336.1-P	AT5G42970.1	16844902
AT5G46210.1	Bra020355.1-P	AT5G58760.1	18551167

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35152	Canola	plastid	99.87	99.87
Bra025031.1-P	Field mustard	cytosol	91.86	95.0
KRH21073	Soybean	cytosol	34.35	94.41
Bra022023.1-P	Field mustard	plastid	94.15	94.27
AT5G46210.1	Thale cress	cytosol	90.46	89.77
KRH11182	Soybean	cytosol, plastid	82.19	81.98
KRH58640	Soybean	cytosol	80.15	81.29
KRH42547	Soybean	cytosol	79.26	81.01
Solyc02g021470.2.1	Tomato	cytosol, nucleus, plastid	80.66	80.76
VIT_10s0003g03710.t01	Wine grape	cytosol	81.68	80.05
TraesCS5A01G425300.1	Wheat	cytosol	72.14	79.75
GSMUA_Achr4P22850_001	Banana	cytosol	78.37	76.71
Solyc02g070460.2.1	Tomato	plastid	78.12	76.56
KRH21072	Soybean	plastid	45.42	73.91
TraesCS5B01G427400.1	Wheat	cytosol	74.94	73.35
EER93338	Sorghum	plastid	76.59	72.18
TraesCS5D01G433700.3	Wheat	cytosol, plastid	75.95	71.93
Zm00001d034361_P001	Maize	cytosol, plastid	76.08	71.88
HORVU5Hr1G103580.2	Barley	plastid	76.08	71.79
GSMUA_Achr7P01270_001	Banana	cytosol	78.88	70.86
Zm00001d013116_P002	Maize	plastid	76.08	69.53
Bra016291.1-P	Field mustard	cytosol	38.42	41.26
Bra024680.1-P	Field mustard	cytosol	38.3	41.12
Bra000874.1-P	Field mustard	cytosol	30.03	31.98
Bra032576.1-P	Field mustard	cytosol	29.26	31.17
Bra018706.1-P	Field mustard	cytosol	26.46	30.81
Bra033362.1-P	Field mustard	cytosol	27.48	30.17
Bra034597.1-P	Field mustard	cytosol	27.74	29.82
Bra028442.1-P	Field mustard	cytosol	26.34	29.45
Bra033363.1-P	Field mustard	cytosol	28.5	28.79
Bra032570.1-P	Field mustard	cytosol	21.37	24.14
Bra036257.1-P	Field mustard	cytosol, nucleus, peroxisome	30.03	23.94

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.2620	Gene3D:1.20.1310.10	MapMan:19.2.2.8.3.1	MapMan:26.1.1.3.1	EnsemblPlantsGene:Bra017569
EnsemblPlants:Bra017569.1	EnsemblPlants:Bra017569.1-P	InterPro:Cullin_CS	InterPro:Cullin_N	InterPro:Cullin_homology	InterPro:Cullin_homology_sf
InterPro:Cullin_neddylation_domain	InterPro:Cullin_repeat-like_dom_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0019538	GO:GO:0031461	GO:GO:0031625	InterPro:IPR016158	InterPro:IPR036388
UniProt:M4DM38	PFAM:PF00888	PFAM:PF10557	ScanProsite:PS01256	PFscan:PS50069	PANTHER:PTHR11932
PANTHER:PTHR11932:SF27	SMART:SM00182	SMART:SM00884	SUPFAM:SSF46785	SUPFAM:SSF74788	SUPFAM:SSF75632
UniParc:UPI0002542536	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:	:

Description

AT5G46210 (E=0.0) CUL4, ATCUL4 | CUL4 (CULLIN4); protein binding / ubiquitin-protein ligase

Coordinates

chrA09:+:16576968..16581420

Molecular Weight (calculated)

90488.3 Da

IEP (calculated)

8.371

GRAVY (calculated)

-0.427

Length

786 amino acids

Sequence
(BLAST)

001: MSLPNKRSTC PAAASSASTT DSSYSSPPPM KKSKNGLHSP FPMEDEDPTP SAAANLSRKK ATLPHPTKKL VIKLNKAKPT LPTNFEDTTW ANLQSAIRAI
101: FLKKPFSFDL ERLYQAVDAL CLHKLEGKLY ERMQKECEEH ISAALHSLVG QDTDLSVFLS LVEKCWQDFC DQMLMIRSIA LSLDRKYVIQ NPNVRSLWEM
201: GLQLFRKHLS LSPDVEQRTV TALLRIIEKE RLAEAVNRTL LSHLLKMFTA LGIYTEGFEK PFLECTSEFY AAEGMKYMQQ YDVPEYLKHV EGRLHEENEK
301: CILYIDASTR KPLISTVEKQ LLERHIVAIL DKGFTPLMDG RRTEDLQRMY TLFSRVSALE SMRQALSSYT RKTGQKIVMD EEKDKDMVQS LLDFKACLDI
401: VWEDSFCKNE SFGNTIKDSF EHLINLRQNR PAELIAKFLD EKLRAGNKGT SEEELESTLE KVLVLFRFIQ GKDVFEAFYK KDLAKRLLLG KSASIDAEKS
501: MISKLKTECG SQFTNKLEGM FKDIELSKEI NESFKQSSQA RTKLPSGIEM SVHVLTTGYW PTYPPMDVKL PHELNVYQDI FKEFYLSKYS GRRLMWQNSL
601: GHCVLKADFS KGKKELAVSL FQAVVLMLFN DAMKLSFEDI KDSTGIEDKE LRRTLQSLAC GKVRVLQKYP KGRDVQDGDE FDFNDTFTAP LYRIKVNAIQ
701: MKETVEENTS TTERVFQDRQ YQIDAAIVRI MKTRKVLSHT LLITELFQQL KFPIKPADLK KRIESLIDRE YLERDKTNPQ IYNYLA

Best Arabidopsis Sequence Match ( AT5G46210.1 )
(BLAST)

001: MSLPTKRSTF SAASASDDSS YSSPPMKKAK NDLHHSPQHP NTADKVVGFH MEEDPTPAAA NLSRKKATLP QPTKKFVIKL NKAKPTLPTN FEENTWEKLQ
101: SAIRAIFLKK KISFDLESLY QAVDNLCLHK LDGKLYDQIE KECEEHISAA LQSLVGQNTD LTVFLSRVEK CWQDFCDQML MIRSIALTLD RKYVIQNPNV
201: RSLWEMGLQL FRKHLSLAPE VEQRTVKGLL SMIEKERLAE AVNRTLLSHL LKMFTALGIY MESFEKPFLE GTSEFYAAEG MKYMQQSDVP EYLKHVEGRL
301: HEENERCILY IDAVTRKPLI TTVERQLLER HILVVLEKGF TTLMDGRRTE DLQRMQTLFS RVNALESLRQ ALSSYVRKTG QKIVMDEEKD KDMVQSLLDF
401: KASLDIIWEE SFYKNESFGN TIKDSFEHLI NLRQNRPAEL IAKFLDEKLR AGNKGTSEEE LESVLEKVLV LFRFIQGKDV FEAFYKKDLA KRLLLGKSAS
501: IDAEKSMISK LKTECGSQFT NKLEGMFKDI ELSKEINESF KQSSQARTKL PSGIEMSVHV LTTGYWPTYP PMDVKLPHEL NVYQDIFKEF YLSKYSGRRL
601: MWQNSLGHCV LKADFSKGKK ELAVSLFQAV VLMLFNDAMK LSFEDIKDST SIEDKELRRT LQSLACGKVR VLQKNPKGRD VEDGDEFEFN DEFAAPLYRI
701: KVNAIQMKET VEENTSTTER VFQDRQYQID AAIVRIMKTR KVLSHTLLIT ELFQQLKFPI KPADLKKRIE SLIDREYLER EKSNPQIYNY LA

Arabidopsis Description

CUL4Cullin-4 [Source:UniProtKB/Swiss-Prot;Acc:Q8LGH4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.