Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra017569.1-P | |
| Bra022023.1-P | |
| Bra025031.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G21100.1 | Bra017569.1-P | AT5G46210.1 | 16792691 |
| AT4G21100.1 | Bra022023.1-P | AT5G46210.1 | 16792691 |
| AT4G21100.1 | Bra025031.1-P | AT5G46210.1 | 16792691 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX76416 | Canola | cytosol | 86.97 | 98.85 |
| AT4G21100.1 | Thale cress | nucleus | 76.44 | 90.07 |
| Bra029577.1-P | Field mustard | nucleus, peroxisome, plastid | 75.51 | 89.13 |
| KRH59213 | Soybean | cytosol, plasma membrane, plastid | 34.17 | 87.6 |
| VIT_10s0003g04360.t01 | Wine grape | cytosol, nucleus, plasma membrane | 72.62 | 85.49 |
| Solyc02g021650.2.1 | Tomato | nucleus | 71.61 | 83.84 |
| GSMUA_Achr8P07200_001 | Banana | cytosol, nucleus, plasma membrane | 69.5 | 81.82 |
| KRH25071 | Soybean | nucleus | 38.07 | 81.74 |
| KRH59212 | Soybean | cytosol, nucleus | 32.92 | 79.17 |
| KXG22678 | Sorghum | nucleus | 66.46 | 78.24 |
| Zm00001d039165_P046 | Maize | nucleus | 66.46 | 77.95 |
| TraesCS1B01G473400.1 | Wheat | nucleus | 66.07 | 77.71 |
| TraesCS1D01G445700.1 | Wheat | unclear | 65.99 | 77.61 |
| TraesCSU01G002300.1 | Wheat | golgi, plastid | 65.99 | 77.61 |
| KRH43086 | Soybean | nucleus | 12.09 | 76.35 |
| Zm00001d009745_P023 | Maize | cytosol, nucleus, plasma membrane, plastid | 63.18 | 73.7 |
| HORVU1Hr1G094530.1 | Barley | nucleus, plastid | 65.68 | 73.6 |
| TraesCS3A01G210100.2 | Wheat | nucleus | 54.13 | 63.85 |
| TraesCS3B01G240600.1 | Wheat | cytosol | 51.4 | 63.73 |
| HORVU7Hr1G056620.1 | Barley | cytosol | 5.77 | 63.25 |
| HORVU3Hr1G050820.11 | Barley | plastid | 54.29 | 61.48 |
| HORVU7Hr1G056610.1 | Barley | cytosol | 7.96 | 51.26 |
| PGSC0003DMT400009595 | Potato | nucleus | 9.36 | 45.98 |
| Bra034172.1-P | Field mustard | nucleus, plastid, vacuole | 19.5 | 20.59 |
| Bra001431.1-P | Field mustard | nucleus, plastid | 15.37 | 14.69 |
| Bra034797.1-P | Field mustard | nucleus | 14.9 | 13.15 |
Protein Annotations
| MapMan:14.6.1.3.1 | MapMan:19.2.2.8.3.2 | Gene3D:2.130.10.10 | MapMan:26.1.1.3.2 | InterPro:2Fe-2S_ferredoxin-like_sf | Gene3D:3.10.20.30 |
| Gene3D:3.30.980.30 | MapMan:7.11.2.1.5 | InterPro:Beta-grasp_dom_sf | EnsemblPlantsGene:Bra020884 | EnsemblPlants:Bra020884.1 | EnsemblPlants:Bra020884.1-P |
| InterPro:Cleavage/polyA-sp_fac_asu_C | ncoils:Coil | InterPro:DDB1 | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006091 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006281 | GO:GO:0006950 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009055 | GO:GO:0009790 | GO:GO:0009791 |
| GO:GO:0009793 | GO:GO:0009987 | GO:GO:0022900 | GO:GO:0051536 | InterPro:IPR012675 | InterPro:IPR015943 |
| UniProt:M4DWJ0 | PFAM:PF03178 | PFAM:PF10433 | PANTHER:PTHR10644 | PANTHER:PTHR10644:SF3 | SUPFAM:SSF50978 |
| SUPFAM:SSF54292 | UniParc:UPI0002545C15 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat_dom_sf | SEG:seg | : |
Description
AT4G21100 (E=0.0) DDB1B | DDB1B (Damaged DNA Binding Protein 1 B); damaged DNA binding / protein binding
Coordinates
chrA08:+:11452382..11461794
Molecular Weight (calculated)
143452.0 Da
IEP (calculated)
4.763
GRAVY (calculated)
-0.187
Length
1282 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSVWNYVVTA QKPTSVTHSC VGNFTSPQEL NLIVAKCTRI EIHLLTPQGL QAILDVPLYG RIATLELFRP HGETQDFLFI ATEGYKFCVL QWDSDSSELI
0101: TRAMGDVSDR IGRQTDNGQI GIIDPDCRFI GLHLYDGLFK VVPFDNKGQL KEAYNIRLEE LQVLDIKFLY GCAKPTIAVL YQDNKDARHV KTYEVSQKEK
0201: DFVEGPWSQN NLDNGADLLI PVPSPLCGVL IIGEETIVYC SANALKAIPI RSSITKAYGR VDVDGSRYLL GDHAGLIHLL VITHEKEKVT GLKIELLGET
0301: SIASTISYLD NAVVFIGSSY GDSQLIKLNM QPDANGSYVE IIEQYVNLGP IVDFCVVDLE RQGQGQVVTC SGAYKDGSLR IVRNGIGINE QASVELPGIK
0401: GMWSLKSSID EAFDTFLVVS FISETRILAM NIEDELEDTE IEGFLSQVQT LFCHDAVYNQ LVQITSNSVR LVSSTTRQLR NKWDAPAGFT VNVATANASQ
0501: VLLATGGGHL VYIEIGDGTL TEVKHAQLEY EVSCLDINPT GDNPNYSQLA AVGMWTDISV RIFVLPDLTL ITKEQLGGEI IPRSVLLCAF EGISYLLCAL
0601: GDGHLLNFQL DTRTGELRDR KKVSLGTQPI TLRTFSSKSA THVFAASDRP SVIYSNNKKL IYSNVNLKEV SHMCPFNSGA FPDSLAIARE GELTIGTIDE
0701: IQKLHIRTIP IGEHARRICH QEQTRTFAIC SLRNQPSGEE SEMHFVRLLD DRDFEFLATY PLDAFEYGCS ILSCSFTDDK NVYYCVGTSY VLPEENEPTK
0801: GRILVFVVEE GKLQLVAEKE TKGSVYSLNA FNGKLLAAIN QKIQLYKWTL RDDGTRELQS ECGHHGHILA LYVQTRGDFI VVGDLMKSIS LLIYKHEEGA
0901: IEEIARDYNA SWMTAVGILD DDTYLGADNC YNLFTVKRHS EAATDEERCR MEVVGEYHIG EFVNRFRHGS LVMRLPDSET SQIPTMIFGT VNGVIGVMAS
1001: LPQEQYAFLE KLQTSMRKVI KGVGGLSHEQ WRSFKNEKRS ADARSFLDGD LIESFMDMSR RKMEEISKEM DVQVEELCVL ESTAKKERIH KLIRAKDDEW
1101: MRGSDDRFQQ SHDRSFLAVT QTQTRTFQQA FFSNNHNLCT SFSTSSEKSG EETEKINVIF VDKDGEENHI KVPVGMNILE AAHENDIELE GTPFFHFILS
1201: FGSDDILFFC LNQDSNKDTE YYNKLEEPTD EENDMLDLAF ALTETSRLGC QVIAKPEIDG IRLAIPSATR NFAVDGFVPK PH
0101: TRAMGDVSDR IGRQTDNGQI GIIDPDCRFI GLHLYDGLFK VVPFDNKGQL KEAYNIRLEE LQVLDIKFLY GCAKPTIAVL YQDNKDARHV KTYEVSQKEK
0201: DFVEGPWSQN NLDNGADLLI PVPSPLCGVL IIGEETIVYC SANALKAIPI RSSITKAYGR VDVDGSRYLL GDHAGLIHLL VITHEKEKVT GLKIELLGET
0301: SIASTISYLD NAVVFIGSSY GDSQLIKLNM QPDANGSYVE IIEQYVNLGP IVDFCVVDLE RQGQGQVVTC SGAYKDGSLR IVRNGIGINE QASVELPGIK
0401: GMWSLKSSID EAFDTFLVVS FISETRILAM NIEDELEDTE IEGFLSQVQT LFCHDAVYNQ LVQITSNSVR LVSSTTRQLR NKWDAPAGFT VNVATANASQ
0501: VLLATGGGHL VYIEIGDGTL TEVKHAQLEY EVSCLDINPT GDNPNYSQLA AVGMWTDISV RIFVLPDLTL ITKEQLGGEI IPRSVLLCAF EGISYLLCAL
0601: GDGHLLNFQL DTRTGELRDR KKVSLGTQPI TLRTFSSKSA THVFAASDRP SVIYSNNKKL IYSNVNLKEV SHMCPFNSGA FPDSLAIARE GELTIGTIDE
0701: IQKLHIRTIP IGEHARRICH QEQTRTFAIC SLRNQPSGEE SEMHFVRLLD DRDFEFLATY PLDAFEYGCS ILSCSFTDDK NVYYCVGTSY VLPEENEPTK
0801: GRILVFVVEE GKLQLVAEKE TKGSVYSLNA FNGKLLAAIN QKIQLYKWTL RDDGTRELQS ECGHHGHILA LYVQTRGDFI VVGDLMKSIS LLIYKHEEGA
0901: IEEIARDYNA SWMTAVGILD DDTYLGADNC YNLFTVKRHS EAATDEERCR MEVVGEYHIG EFVNRFRHGS LVMRLPDSET SQIPTMIFGT VNGVIGVMAS
1001: LPQEQYAFLE KLQTSMRKVI KGVGGLSHEQ WRSFKNEKRS ADARSFLDGD LIESFMDMSR RKMEEISKEM DVQVEELCVL ESTAKKERIH KLIRAKDDEW
1101: MRGSDDRFQQ SHDRSFLAVT QTQTRTFQQA FFSNNHNLCT SFSTSSEKSG EETEKINVIF VDKDGEENHI KVPVGMNILE AAHENDIELE GTPFFHFILS
1201: FGSDDILFFC LNQDSNKDTE YYNKLEEPTD EENDMLDLAF ALTETSRLGC QVIAKPEIDG IRLAIPSATR NFAVDGFVPK PH
0001: MSVWNYAVTA QKPTCVTHSC VGNFTSPQEL NLIVAKSTRI EIHLLSPQGL QTILDVPLYG RIATMELFRP HGEAQDFLFV ATERYKFCVL QWDYESSELI
0101: TRAMGDVSDR IGRPTDNGQI GIIDPDCRVI GLHLYDGLFK VIPFDNKGQL KEAFNIRLEE LQVLDIKFLY GCTKPTIAVL YQDNKDARHV KTYEVSLKDK
0201: NFVEGPWSQN NLDNGADLLI PVPSPLCGVL IIGEETIVYC SANAFKAIPI RPSITKAYGR VDLDGSRYLL GDHAGLIHLL VITHEKEKVT GLKIELLGET
0301: SIASSISYLD NAVVFVGSSY GDSQLIKLNL QPDAKGSYVE ILEKYVNLGP IVDFCVVDLE RQGQGQVVTC SGAYKDGSLR IVRNGIGINE QASVELQGIK
0401: GMWSLKSSID EAFDTFLVVS FISETRILAM NIEDELEETE IEGFLSEVQT LFCHDAVYNQ LVQVTSNSVR LVSSTTRELR NKWDAPAGFS VNVATANASQ
0501: VLLATGGGHL VYLEIGDGTL TEVKHVLLEY EVSCLDINPI GDNPNYSQLA AVGMWTDISV RIFVLPDLTL ITKEELGGEI IPRSVLLCAF EGISYLLCAL
0601: GDGHLLNFQL DTSCGKLRDR KKVSLGTRPI TLRTFSSKSA THVFAASDRP AVIYSNNKKL LYSNVNLKEV SHMCPFNSAA FPDSLAIARE GELTIGTIDD
0701: IQKLHIRTIP IGEHARRICH QEQTRTFAIS CLRNEPSAEE SESHFVRLLD AQSFEFLSSY PLDAFECGCS ILSCSFTDDK NVYYCVGTAY VLPEENEPTK
0801: GRILVFIVEE GRLQLITEKE TKGAVYSLNA FNGKLLASIN QKIQLYKWML RDDGTRELQS ECGHHGHILA LYVQTRGDFI AVGDLMKSIS LLIYKHEEGA
0901: IEERARDYNA NWMTAVEILN DDIYLGTDNC FNIFTVKKNN EGATDEERAR MEVVGEYHIG EFVNRFRHGS LVMKLPDSDI GQIPTVIFGT VSGMIGVIAS
1001: LPQEQYAFLE KLQTSLRKVI KGVGGLSHEQ WRSFNNEKRT AEAKGYLDGD LIESFLDLSR GKMEEISKGM DVQVEELCKR VEELTRLH
0101: TRAMGDVSDR IGRPTDNGQI GIIDPDCRVI GLHLYDGLFK VIPFDNKGQL KEAFNIRLEE LQVLDIKFLY GCTKPTIAVL YQDNKDARHV KTYEVSLKDK
0201: NFVEGPWSQN NLDNGADLLI PVPSPLCGVL IIGEETIVYC SANAFKAIPI RPSITKAYGR VDLDGSRYLL GDHAGLIHLL VITHEKEKVT GLKIELLGET
0301: SIASSISYLD NAVVFVGSSY GDSQLIKLNL QPDAKGSYVE ILEKYVNLGP IVDFCVVDLE RQGQGQVVTC SGAYKDGSLR IVRNGIGINE QASVELQGIK
0401: GMWSLKSSID EAFDTFLVVS FISETRILAM NIEDELEETE IEGFLSEVQT LFCHDAVYNQ LVQVTSNSVR LVSSTTRELR NKWDAPAGFS VNVATANASQ
0501: VLLATGGGHL VYLEIGDGTL TEVKHVLLEY EVSCLDINPI GDNPNYSQLA AVGMWTDISV RIFVLPDLTL ITKEELGGEI IPRSVLLCAF EGISYLLCAL
0601: GDGHLLNFQL DTSCGKLRDR KKVSLGTRPI TLRTFSSKSA THVFAASDRP AVIYSNNKKL LYSNVNLKEV SHMCPFNSAA FPDSLAIARE GELTIGTIDD
0701: IQKLHIRTIP IGEHARRICH QEQTRTFAIS CLRNEPSAEE SESHFVRLLD AQSFEFLSSY PLDAFECGCS ILSCSFTDDK NVYYCVGTAY VLPEENEPTK
0801: GRILVFIVEE GRLQLITEKE TKGAVYSLNA FNGKLLASIN QKIQLYKWML RDDGTRELQS ECGHHGHILA LYVQTRGDFI AVGDLMKSIS LLIYKHEEGA
0901: IEERARDYNA NWMTAVEILN DDIYLGTDNC FNIFTVKKNN EGATDEERAR MEVVGEYHIG EFVNRFRHGS LVMKLPDSDI GQIPTVIFGT VSGMIGVIAS
1001: LPQEQYAFLE KLQTSLRKVI KGVGGLSHEQ WRSFNNEKRT AEAKGYLDGD LIESFLDLSR GKMEEISKGM DVQVEELCKR VEELTRLH
Arabidopsis Description
DDB1BDNA damage-binding protein 1b [Source:UniProtKB/Swiss-Prot;Acc:O49552]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.