Factsheet for Bra034172.1-P

Subcellular Localization

min:

: max

Winner_takes_all: vacuole, plastid, nucleus

Predictor Summary:

nucleus 4
plastid 2
extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid, vacuole
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY36309	Canola	cytosol, nucleus, plastid	96.21	98.9
CDY36325	Canola	nucleus, plastid, vacuole	96.54	98.74
AT3G55220.1	Thale cress	nucleus, vacuole	95.47	95.47
AT3G55200.1	Thale cress	nucleus, vacuole	95.47	95.47
VIT_00s0317g00100.t01	Wine grape	endoplasmic reticulum	89.13	89.13
KRH36214	Soybean	nucleus	87.56	87.56
KRG92964	Soybean	nucleus	87.23	87.23
PGSC0003DMT400077607	Potato	nucleus	86.33	86.54
Solyc04g010260.2.1	Tomato	nucleus	82.13	84.85
GSMUA_Achr9P30340_001	Banana	cytosol	48.27	83.71
GSMUA_Achr6P19780_001	Banana	cytosol	64.91	80.66
Os02t0137400-01	Rice	nucleus	56.59	80.07
HORVU6Hr1G019130.1	Barley	mitochondrion	79.9	79.05
Zm00001d015208_P003	Maize	extracellular, plasma membrane	79.82	78.84
TraesCS6B01G135400.1	Wheat	unclear	79.57	78.73
TraesCS6D01G095000.1	Wheat	mitochondrion	79.49	78.65
TraesCS6A01G107200.1	Wheat	nucleus	79.41	78.57
EES04483	Sorghum	mitochondrion	79.65	78.49
VIT_15s0107g00230.t01	Wine grape	nucleus	7.91	73.85
VIT_15s0107g00220.t01	Wine grape	cytosol	8.4	70.34
Bra029577.1-P	Field mustard	nucleus, peroxisome, plastid	20.51	22.93
Bra020884.1-P	Field mustard	cytosol	20.59	19.5
Bra001431.1-P	Field mustard	nucleus, plastid	19.93	18.05
Bra034797.1-P	Field mustard	nucleus	19.44	16.25

Protein Annotations

MapMan:16.4.1.2.4.3	Gene3D:2.130.10.10	EnsemblPlantsGene:Bra034172	EnsemblPlants:Bra034172.1	EnsemblPlants:Bra034172.1-P	InterPro:Cleavage/polyA-sp_fac_asu_C
GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	InterPro:IPR015943	UniProt:M4EZC9	PFAM:PF03178	PFAM:PF10433
PANTHER:PTHR10644	PANTHER:PTHR10644:SF1	SUPFAM:SSF50978	SUPFAM:SSF69322	UniParc:UPI0002543DB6	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:	:

Description

AT3G55220 (E=0.0) | splicing factor, putative

Coordinates

chrA01:-:27081782..27085656

Molecular Weight (calculated)

134740.0 Da

IEP (calculated)

5.223

GRAVY (calculated)

-0.193

Length

1214 amino acids

Sequence
(BLAST)

0001: MYLYSLTLQQ ATGITCAING NFSGGKAQEI AVARGKILDL LRPDENGKIQ TIHSVEVFGA IRSLAQFRLT GGQKDYIVVG SDSGRIVILE YNKEKNVFDK
0101: VHQETFGKSG CRRIVPGQYL AVDPKGRAVM VGACEKQKLV YVLNRDTAAR LTISSPLEAH KSHTICYSVC GVDCGFDNPV FAAVELDYSE ADQDPTGQAS
0201: SEAQKHLTFY ELDLGLNHVS RKWSEPVDNG ANMLVTVPGG ADGPSGVLVC AENFVIYKNQ GHADVRAVIP RRADLPAERG VLVVSAAMHK QKTTFFFLLQ
0301: TEYGDVFKAT LDHDGDHVSE LKIKYFDTIP VAASICVLKL GFLFAASEFG NHGLYQFQAI GDEPDVESSS SNLMETEDGF QPVFFQPRRL KNLVRIDQVE
0401: SLMPLMDMKV LNLFEEETPQ IFSLCGRGPR SSLRILRPGL AISEMAVSQL PGQPSAVWTV KKNVSDEFDA YIVVSFTNAT LVLSIGETVE EVNDSGFLDT
0501: TPSLAVSLIG DDSLMQVHPN GIRHIREDGR INEWRTPGKR SIVKVGYNRL QVVIALSGGE LIYFEADMTG QLMEVEKHEM SGDVACLDIA PVPEGRQRSR
0601: FLAVGSYDNT VRILSLDPDD CLQILSVQSV SSAPESLLFL EVQASIGGDD GADHPASLFL NSGLQNGVLF RTVVDMVTGQ LSDSRSRFLG LKPPKLFAIS
0701: VRGRSAMLCL SSRPWLGYIH RGHFHLTPLS YETLEFAAPF SSDQCAEGVV SVAGDALRIF MFDRLGETFN ETMVPLRYTP RKFVVHPKKK LLVIVESDQG
0801: AFTAEEREAA RKECFQAGGA GENGNGSADQ MENGGDDEDK EDPLCDEQYG YPKAESEKWV SCIRVVDPKT ADTTCLLELQ DNEAAYSVCT VNFHDKEYGT
0901: LLAVGTVKGM QFWPKKRLVA GFIHIYRFVE EGRKLELLHK TQVEGVPLAL CQFQGRLLAG IGPVLRLYDL GKKRLLRKCE NKLFPNTIIS IQTYRDRIYV
1001: GDIQESFHYC KYRRDENQLY IFADDCVPRW LTASHHVDFD TMAGADKFGN IYFVRLPQDV SEEIEEDPTG GKIKWEQGKL NGAPNKVDEI VQFHVGDVVT
1101: CLQKASMIPG GSESIMYGTV MGSIGALHAF TSRDDVDFFS HLEMHMRQEY PPLCGRDHMA YRSAYFPVKD VIDGDLCEQF PTLPIDLQRK IADELDRTPA
1201: EILKKLEDAR NKII

Best Arabidopsis Sequence Match ( AT3G55200.2 )
(BLAST)

0001: MYLYSLTLQQ ATGIVCAING NFSGGKTQEI AVARGKILDL LRPDENGKIQ TIHSVEVFGA IRSLAQFRLT GAQKDYIVVG SDSGRIVILE YNKEKNVFDK
0101: VHQETFGKSG CRRIVPGQYV AVDPKGRAVM IGACEKQKLV YVLNRDTTAR LTISSPLEAH KSHTICYSLC GVDCGFDNPI FAAIELDYSE ADQDPTGQAA
0201: SEAQKHLTFY ELDLGLNHVS RKWSNPVDNG ANMLVTVPGG ADGPSGVLVC AENFVIYMNQ GHPDVRAVIP RRTDLPAERG VLVVSAAVHK QKTMFFFLIQ
0301: TEYGDVFKVT LDHNGDHVSE LKVKYFDTIP VASSICVLKL GFLFSASEFG NHGLYQFQAI GEEPDVESSS SNLMETEEGF QPVFFQPRRL KNLVRIDQVE
0401: SLMPLMDMKV LNIFEEETPQ IFSLCGRGPR SSLRILRPGL AITEMAVSQL PGQPSAVWTV KKNVSDEFDA YIVVSFTNAT LVLSIGEQVE EVNDSGFLDT
0501: TPSLAVSLIG DDSLMQVHPN GIRHIREDGR INEWRTPGKR SIVKVGYNRL QVVIALSGGE LIYFEADMTG QLMEVEKHEM SGDVACLDIA PVPEGRKRSR
0601: FLAVGSYDNT VRILSLDPDD CLQILSVQSV SSAPESLLFL EVQASIGGDD GADHPANLFL NSGLQNGVLF RTVVDMVTGQ LSDSRSRFLG LKPPKLFSIS
0701: VRGRSAMLCL SSRPWLGYIH RGHFHLTPLS YETLEFAAPF SSDQCAEGVV SVAGDALRIF MIDRLGETFN ETVVPLRYTP RKFVLHPKRK LLVIIESDQG
0801: AFTAEEREAA RKECFEAGGV GENGNGNADQ MENGADDEDK EDPLSDEQYG YPKAESEKWV SCIRVLDPKT ATTTCLLELQ DNEAAYSVCT VNFHDKEYGT
0901: LLAVGTVKGM QFWPKKNLVA GFIHIYRFVE DGKSLELLHK TQVEGVPLAL CQFQGRLLAG IGPVLRLYDL GKKRLLRKCE NKLFPNTIIS IQTYRDRIYV
1001: GDIQESFHYC KYRRDENQLY IFADDCVPRW LTASHHVDFD TMAGADKFGN VYFVRLPQDL SEEIEEDPTG GKIKWEQGKL NGAPNKVDEI VQFHVGDVVT
1101: CLQKASMIPG GSESIMYGTV MGSIGALHAF TSRDDVDFFS HLEMHMRQEY PPLCGRDHMA YRSAYFPVKD VIDGDLCEQF PTLPMDLQRK IADELDRTPA
1201: EILKKLEDAR NKII

Arabidopsis Description

SAP130ASpliceosome-associated protein 130 B [Source:UniProtKB/Swiss-Prot;Acc:P0DKL6]
SUBAcon: [vacuole,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.