Factsheet for PGSC0003DMT400077607

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g010260.2.1	Tomato	nucleus	94.47	97.36
VIT_00s0317g00100.t01	Wine grape	endoplasmic reticulum	91.33	91.1
KRH36214	Soybean	nucleus	88.69	88.47
KRG92964	Soybean	nucleus	88.6	88.39
Bra034172.1-P	Field mustard	nucleus, plastid, vacuole	86.54	86.33
AT3G55220.1	Thale cress	nucleus, vacuole	86.46	86.24
AT3G55200.1	Thale cress	nucleus, vacuole	86.46	86.24
CDY36309	Canola	cytosol, nucleus, plastid	83.65	85.77
CDY36325	Canola	nucleus, plastid, vacuole	83.73	85.43
GSMUA_Achr9P30340_001	Banana	cytosol	48.47	83.86
GSMUA_Achr6P19780_001	Banana	cytosol	66.39	82.29
Os02t0137400-01	Rice	nucleus	57.72	81.47
Zm00001d015208_P003	Maize	extracellular, plasma membrane	81.67	80.47
HORVU6Hr1G019130.1	Barley	mitochondrion	81.42	80.36
TraesCS6B01G135400.1	Wheat	unclear	81.09	80.03
EES04483	Sorghum	mitochondrion	81.42	80.03
TraesCS6D01G095000.1	Wheat	mitochondrion	80.92	79.87
TraesCS6A01G107200.1	Wheat	nucleus	80.84	79.79
VIT_15s0107g00220.t01	Wine grape	cytosol	8.75	73.1
VIT_15s0107g00230.t01	Wine grape	nucleus	7.68	71.54
PGSC0003DMT400009595	Potato	nucleus	4.29	19.92

Protein Annotations

EntrezGene:102606375	MapMan:16.4.1.2.4.3	Gene3D:2.130.10.10	InterPro:Cleavage/polyA-sp_fac_asu_C	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
InterPro:IPR015943	UniProt:M1CYM7	PFAM:PF03178	PFAM:PF10433	EnsemblPlantsGene:PGSC0003DMG400030187	PGSC:PGSC0003DMG400030187
EnsemblPlants:PGSC0003DMT400077607	PANTHER:PTHR10644	PANTHER:PTHR10644:SF1	SUPFAM:SSF50978	SUPFAM:SSF63829	UniParc:UPI000294802E
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat_dom_sf	RefSeq:XP_006361388.1	:	:	:

Description

Spliceosomal protein sap [Source:PGSC_GENE;Acc:PGSC0003DMG400030187]

Coordinates

chr4:-:6656116..6662569

Molecular Weight (calculated)

134493.0 Da

IEP (calculated)

5.080

GRAVY (calculated)

-0.175

Length

1211 amino acids

Sequence
(BLAST)

0001: MYLYSLTLQQ PTGVICAING NFSGGKVQEI VVARGKVLDL LRPDDNGKLQ TLLSVEIFGA IRSLAQFRLT GAQKDYIVVG SDSGRIVILE YNKEKNCFDK
0101: VHQETFGKSG CRRIVPGQYL AIDPKGRAVM IGACEKQKLV YVLNRDTAAR LTISSPLEAH KSHTITFSIC GVDCGFDNPI FAAIELDYSE ADQDPTGQAA
0201: NEAQKHLTFY ELDLGLNHVS RKWSEQVDNG ANLLVTVPGG GDGPSGVLVC AENFVIYKNQ GHPDVRAVIP RRVDLPAERG VLIVSAAMHK QKTMFFFLLQ
0301: TEYGDIFKVT LDHDNDRVKE LKIKYFDTIP VTSSLCVLKS GFLFASSEFG NHALYQFQAI GDDPDVEASS STLMETEEGF QPVFFQPRKL KNLVRIDQIE
0401: SLMPIMDMKI VNLFEEETPQ IFSLCGRGPR SSLRILRPGL AVSEMAVSQL PGVPSAVWTV KKNVNDEFDA YIVVSFANAT LVLSIGETVE EVSDSGFLDT
0501: TPSLSVSLIG DDSLMQVHPS GIRHIREDGR INEWRTPGKR TIVKVGSNRL QVVIALSGGE LIYFEVDMTG QLMEVEKHEM SGDVACLDIA PVPEGRQRSR
0601: FLAVGSYDNT IRILSLDPDD CMQVLSLQSV SSPPESLLFL EVQASVGGED GADHPASLFL NAGLQNGVLF RTVVDMNGGQ LSDARSRFLG LRAPKLFSIV
0701: VRGRRAMLCL SSRPWLGYIH QGQFLLTPLS YESLEFAASF SSDQCAEGVV AVAGDALRVF TIERLGETFN ETAIPLRYTP RRFVLQPKKK MVIMIESDQG
0801: AYTAEEREAA KKECFEAAGN GENGSAEQME NGEDEDGSDP LSDEQYGYPK SESGRWVSCI RVLDPRTTQT TCLLELQDNE AAFSICTVNF HDKEHGALLA
0901: VGTAKGLQFW PKKSFEAAYI HIYKFKEDGK VLELLHKTQV DGVPLALCQF QGRLLAGIGS VLRLYDLGKK RLLRKCENKL FPNSITAIHT YRDRIYVGDM
1001: QESFHYCKYR RDENQLYIFA DDTVPRWLTA AQHVDFDTVA GADKFGNIYF VRLSQDVSDE IEEDPTGGKI KWEQGKLNGA PNKLEEIVQF HVGDVVSCLQ
1101: KASLIPGGGE CIIYGTVMGS VGAMLPFTSR DDVDFFSHLE MHLRQEFPPL CGRDHMAYRS AYFPVKDVID GDLCEQFPTL PMDMQRKIAD ELDRTPGEIL
1201: KKLEEIRNKI I

Best Arabidopsis Sequence Match ( AT3G55200.2 )
(BLAST)

0001: MYLYSLTLQQ ATGIVCAING NFSGGKTQEI AVARGKILDL LRPDENGKIQ TIHSVEVFGA IRSLAQFRLT GAQKDYIVVG SDSGRIVILE YNKEKNVFDK
0101: VHQETFGKSG CRRIVPGQYV AVDPKGRAVM IGACEKQKLV YVLNRDTTAR LTISSPLEAH KSHTICYSLC GVDCGFDNPI FAAIELDYSE ADQDPTGQAA
0201: SEAQKHLTFY ELDLGLNHVS RKWSNPVDNG ANMLVTVPGG ADGPSGVLVC AENFVIYMNQ GHPDVRAVIP RRTDLPAERG VLVVSAAVHK QKTMFFFLIQ
0301: TEYGDVFKVT LDHNGDHVSE LKVKYFDTIP VASSICVLKL GFLFSASEFG NHGLYQFQAI GEEPDVESSS SNLMETEEGF QPVFFQPRRL KNLVRIDQVE
0401: SLMPLMDMKV LNIFEEETPQ IFSLCGRGPR SSLRILRPGL AITEMAVSQL PGQPSAVWTV KKNVSDEFDA YIVVSFTNAT LVLSIGEQVE EVNDSGFLDT
0501: TPSLAVSLIG DDSLMQVHPN GIRHIREDGR INEWRTPGKR SIVKVGYNRL QVVIALSGGE LIYFEADMTG QLMEVEKHEM SGDVACLDIA PVPEGRKRSR
0601: FLAVGSYDNT VRILSLDPDD CLQILSVQSV SSAPESLLFL EVQASIGGDD GADHPANLFL NSGLQNGVLF RTVVDMVTGQ LSDSRSRFLG LKPPKLFSIS
0701: VRGRSAMLCL SSRPWLGYIH RGHFHLTPLS YETLEFAAPF SSDQCAEGVV SVAGDALRIF MIDRLGETFN ETVVPLRYTP RKFVLHPKRK LLVIIESDQG
0801: AFTAEEREAA RKECFEAGGV GENGNGNADQ MENGADDEDK EDPLSDEQYG YPKAESEKWV SCIRVLDPKT ATTTCLLELQ DNEAAYSVCT VNFHDKEYGT
0901: LLAVGTVKGM QFWPKKNLVA GFIHIYRFVE DGKSLELLHK TQVEGVPLAL CQFQGRLLAG IGPVLRLYDL GKKRLLRKCE NKLFPNTIIS IQTYRDRIYV
1001: GDIQESFHYC KYRRDENQLY IFADDCVPRW LTASHHVDFD TMAGADKFGN VYFVRLPQDL SEEIEEDPTG GKIKWEQGKL NGAPNKVDEI VQFHVGDVVT
1101: CLQKASMIPG GSESIMYGTV MGSIGALHAF TSRDDVDFFS HLEMHMRQEY PPLCGRDHMA YRSAYFPVKD VIDGDLCEQF PTLPMDLQRK IADELDRTPA
1201: EILKKLEDAR NKII

Arabidopsis Description

SAP130ASpliceosome-associated protein 130 B [Source:UniProtKB/Swiss-Prot;Acc:P0DKL6]
SUBAcon: [vacuole,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.