Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 5
- vacuole 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| extracellular:
20408568
plasma membrane: 27341663 |
msms PMID:
27341663
doi
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES04483 | Sorghum | mitochondrion | 98.05 | 97.81 |
| HORVU6Hr1G019130.1 | Barley | mitochondrion | 94.22 | 94.38 |
| TraesCS6D01G095000.1 | Wheat | mitochondrion | 93.82 | 93.97 |
| TraesCS6B01G135400.1 | Wheat | unclear | 93.82 | 93.97 |
| Os02t0137400-01 | Rice | nucleus | 65.5 | 93.82 |
| TraesCS6A01G107200.1 | Wheat | nucleus | 93.65 | 93.81 |
| GSMUA_Achr9P30340_001 | Banana | cytosol | 47.19 | 82.86 |
| VIT_00s0317g00100.t01 | Wine grape | endoplasmic reticulum | 81.45 | 82.45 |
| PGSC0003DMT400077607 | Potato | nucleus | 80.47 | 81.67 |
| KRG92964 | Soybean | nucleus | 79.98 | 80.97 |
| KRH36214 | Soybean | nucleus | 79.82 | 80.81 |
| Solyc04g010260.2.1 | Tomato | nucleus | 76.57 | 80.09 |
| AT3G55220.1 | Thale cress | nucleus, vacuole | 79.01 | 79.98 |
| AT3G55200.1 | Thale cress | nucleus, vacuole | 79.01 | 79.98 |
| Bra034172.1-P | Field mustard | nucleus, plastid, vacuole | 78.84 | 79.82 |
| CDY36309 | Canola | cytosol, nucleus, plastid | 76.65 | 79.76 |
| CDY36325 | Canola | nucleus, plastid, vacuole | 76.81 | 79.53 |
| GSMUA_Achr6P19780_001 | Banana | cytosol | 62.65 | 78.81 |
| VIT_15s0107g00220.t01 | Wine grape | cytosol | 7.65 | 64.83 |
| VIT_15s0107g00230.t01 | Wine grape | nucleus | 6.75 | 63.85 |
| Zm00001d039165_P046 | Maize | nucleus | 19.28 | 21.68 |
| Zm00001d009745_P023 | Maize | cytosol, nucleus, plasma membrane, plastid | 18.88 | 21.11 |
| Zm00001d019115_P048 | Maize | plastid | 17.01 | 15.41 |
Protein Annotations
| EntrezGene:100272422 | MapMan:16.4.1.2.4.3 | Gene3D:2.130.10.10 | UniProt:A0A1D6GZZ1 | ProteinID:AQK68290.1 | InterPro:Cleavage/polyA-sp_fac_asu_C |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | InterPro:IPR015943 | PFAM:PF03178 | PFAM:PF10433 | PANTHER:PTHR10644 |
| PANTHER:PTHR10644:SF1 | SUPFAM:SSF50978 | SUPFAM:SSF69322 | UniParc:UPI00022189F1 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat_dom_sf |
| EnsemblPlantsGene:Zm00001d015208 | EnsemblPlants:Zm00001d015208_P003 | EnsemblPlants:Zm00001d015208_T003 | SEG:seg | : | : |
Description
Cleavage and polyadenylation specificity factor (CPSF) A subunit protein
Coordinates
chr5:+:79389803..79395312
Molecular Weight (calculated)
135869.0 Da
IEP (calculated)
5.192
GRAVY (calculated)
-0.179
Length
1229 amino acids
Sequence
(BLAST)
(BLAST)
0001: MYLYSLTLQR ATGAVCAVIG SFSGRDSKKS AASGSGSTQE IAVARGSTLD LLRPDPETGR LRTLLSVDVF GAIRSLAQFR LTGANKDYLV VGSDSGRLVI
0101: LEYSPDRNRL DKVHQETFGK SGCRRIVPGQ LLAVDPKGRA LCIAALEKQK LVYVLNRDAA ARLTISSPLE AHKSNTLTFA LAALDCGFDN PVFAAIELEY
0201: AESDRDPTGQ AANQAQKLLT FYELDLGLNH VSRKVSEPID NGANLLVTVP GGGDGPSGVL VCCDNFVLYR NQGHPEIRAV IPRRADLPAE RGVLIVAAAT
0301: HKQKSMFFFL LQTEYGDIFK VDLDHNGDAV SELRIKYFDT IPVTSAVCVL RSGFLFAASE FGNHALYQFR DIGREADVES SSATLMETEE GFQPVFFQPR
0401: ALKNLMRIDE IESLMPVMDM RVANLFDEET PQLFTACGRG PRSTLRILRP GLAISEMARS MLPAEPIAVW TVKKNINDMF DAYIVVSFTN VTLVLSIGET
0501: IEEVSDSQFL DTTHSLAVTL LGEDSLMQVH PNGIRHIRED GRVNEWRTPG KKTITKVGSN RLQVVIALSG GELIYFEMDM TGQLMEVEKQ DMSGDVACLA
0601: IAPVPEGRQR SRFLAVGSYD NTIRILSLDP DDCLQPLSVQ SVSSAPESLL FLEVQASVGG EDGADYPANL FLNAGLQNGV LFRTNVDMVT GQLSDTRSRF
0701: LGLRPPKLFP CIVSHRQAML CLSSRPWLGY IHQGHFLLTP LSCDTLESAA SFSSDQCSEG VVAVAGDALR IFTIERLGET FNETAIPLRY TPRKFVILPK
0801: KKYIAVIESD KGAFSAEERE AAKKECLDAS GAAENGNANN GDPMENGDGQ DGAEEGNTFP DEQYGYPKAE SERWVSCIRI LDPRSRDTTC LLELQDNEAA
0901: VSICTVNFHD KEHGTLLAIG TAKGLQFWPR RTLAGGFIHV YKFVDEGRSL ELLHKTQVEE VPLALCQFQG RLLAGVGSVL RLYDLGKRKL LRKCENKLFP
1001: RTLVSIHTYR DRIYVGDMQE SFHYCKYRRD ENQLYIFADD SVPRWLTTAQ HIDFDTMAGA DKFGNIYFAR LPQDISDEIE EDPTGGKIKW EQGKLNGAPN
1101: KVEEIVQFHV GDVVTCLQKA SLIPGGGECL IYGTVMGSVG ALLAFTSRED VDFFSHLEMH LRQEHPPLCG RDHMAYRSAY FPVKDVIDGD LCEQYPSLPA
1201: DMQRKIADEL DRTPGEILKK LEDIRNKII
0101: LEYSPDRNRL DKVHQETFGK SGCRRIVPGQ LLAVDPKGRA LCIAALEKQK LVYVLNRDAA ARLTISSPLE AHKSNTLTFA LAALDCGFDN PVFAAIELEY
0201: AESDRDPTGQ AANQAQKLLT FYELDLGLNH VSRKVSEPID NGANLLVTVP GGGDGPSGVL VCCDNFVLYR NQGHPEIRAV IPRRADLPAE RGVLIVAAAT
0301: HKQKSMFFFL LQTEYGDIFK VDLDHNGDAV SELRIKYFDT IPVTSAVCVL RSGFLFAASE FGNHALYQFR DIGREADVES SSATLMETEE GFQPVFFQPR
0401: ALKNLMRIDE IESLMPVMDM RVANLFDEET PQLFTACGRG PRSTLRILRP GLAISEMARS MLPAEPIAVW TVKKNINDMF DAYIVVSFTN VTLVLSIGET
0501: IEEVSDSQFL DTTHSLAVTL LGEDSLMQVH PNGIRHIRED GRVNEWRTPG KKTITKVGSN RLQVVIALSG GELIYFEMDM TGQLMEVEKQ DMSGDVACLA
0601: IAPVPEGRQR SRFLAVGSYD NTIRILSLDP DDCLQPLSVQ SVSSAPESLL FLEVQASVGG EDGADYPANL FLNAGLQNGV LFRTNVDMVT GQLSDTRSRF
0701: LGLRPPKLFP CIVSHRQAML CLSSRPWLGY IHQGHFLLTP LSCDTLESAA SFSSDQCSEG VVAVAGDALR IFTIERLGET FNETAIPLRY TPRKFVILPK
0801: KKYIAVIESD KGAFSAEERE AAKKECLDAS GAAENGNANN GDPMENGDGQ DGAEEGNTFP DEQYGYPKAE SERWVSCIRI LDPRSRDTTC LLELQDNEAA
0901: VSICTVNFHD KEHGTLLAIG TAKGLQFWPR RTLAGGFIHV YKFVDEGRSL ELLHKTQVEE VPLALCQFQG RLLAGVGSVL RLYDLGKRKL LRKCENKLFP
1001: RTLVSIHTYR DRIYVGDMQE SFHYCKYRRD ENQLYIFADD SVPRWLTTAQ HIDFDTMAGA DKFGNIYFAR LPQDISDEIE EDPTGGKIKW EQGKLNGAPN
1101: KVEEIVQFHV GDVVTCLQKA SLIPGGGECL IYGTVMGSVG ALLAFTSRED VDFFSHLEMH LRQEHPPLCG RDHMAYRSAY FPVKDVIDGD LCEQYPSLPA
1201: DMQRKIADEL DRTPGEILKK LEDIRNKII
0001: MYLYSLTLQQ ATGIVCAING NFSGGKTQEI AVARGKILDL LRPDENGKIQ TIHSVEVFGA IRSLAQFRLT GAQKDYIVVG SDSGRIVILE YNKEKNVFDK
0101: VHQETFGKSG CRRIVPGQYV AVDPKGRAVM IGACEKQKLV YVLNRDTTAR LTISSPLEAH KSHTICYSLC GVDCGFDNPI FAAIELDYSE ADQDPTGQAA
0201: SEAQKHLTFY ELDLGLNHVS RKWSNPVDNG ANMLVTVPGG ADGPSGVLVC AENFVIYMNQ GHPDVRAVIP RRTDLPAERG VLVVSAAVHK QKTMFFFLIQ
0301: TEYGDVFKVT LDHNGDHVSE LKVKYFDTIP VASSICVLKL GFLFSASEFG NHGLYQFQAI GEEPDVESSS SNLMETEEGF QPVFFQPRRL KNLVRIDQVE
0401: SLMPLMDMKV LNIFEEETPQ IFSLCGRGPR SSLRILRPGL AITEMAVSQL PGQPSAVWTV KKNVSDEFDA YIVVSFTNAT LVLSIGEQVE EVNDSGFLDT
0501: TPSLAVSLIG DDSLMQVHPN GIRHIREDGR INEWRTPGKR SIVKVGYNRL QVVIALSGGE LIYFEADMTG QLMEVEKHEM SGDVACLDIA PVPEGRKRSR
0601: FLAVGSYDNT VRILSLDPDD CLQILSVQSV SSAPESLLFL EVQASIGGDD GADHPANLFL NSGLQNGVLF RTVVDMVTGQ LSDSRSRFLG LKPPKLFSIS
0701: VRGRSAMLCL SSRPWLGYIH RGHFHLTPLS YETLEFAAPF SSDQCAEGVV SVAGDALRIF MIDRLGETFN ETVVPLRYTP RKFVLHPKRK LLVIIESDQG
0801: AFTAEEREAA RKECFEAGGV GENGNGNADQ MENGADDEDK EDPLSDEQYG YPKAESEKWV SCIRVLDPKT ATTTCLLELQ DNEAAYSVCT VNFHDKEYGT
0901: LLAVGTVKGM QFWPKKNLVA GFIHIYRFVE DGKSLELLHK TQVEGVPLAL CQFQGRLLAG IGPVLRLYDL GKKRLLRKCE NKLFPNTIIS IQTYRDRIYV
1001: GDIQESFHYC KYRRDENQLY IFADDCVPRW LTASHHVDFD TMAGADKFGN VYFVRLPQDL SEEIEEDPTG GKIKWEQGKL NGAPNKVDEI VQFHVGDVVT
1101: CLQKASMIPG GSESIMYGTV MGSIGALHAF TSRDDVDFFS HLEMHMRQEY PPLCGRDHMA YRSAYFPVKD VIDGDLCEQF PTLPMDLQRK IADELDRTPA
1201: EILKKLEDAR NKII
0101: VHQETFGKSG CRRIVPGQYV AVDPKGRAVM IGACEKQKLV YVLNRDTTAR LTISSPLEAH KSHTICYSLC GVDCGFDNPI FAAIELDYSE ADQDPTGQAA
0201: SEAQKHLTFY ELDLGLNHVS RKWSNPVDNG ANMLVTVPGG ADGPSGVLVC AENFVIYMNQ GHPDVRAVIP RRTDLPAERG VLVVSAAVHK QKTMFFFLIQ
0301: TEYGDVFKVT LDHNGDHVSE LKVKYFDTIP VASSICVLKL GFLFSASEFG NHGLYQFQAI GEEPDVESSS SNLMETEEGF QPVFFQPRRL KNLVRIDQVE
0401: SLMPLMDMKV LNIFEEETPQ IFSLCGRGPR SSLRILRPGL AITEMAVSQL PGQPSAVWTV KKNVSDEFDA YIVVSFTNAT LVLSIGEQVE EVNDSGFLDT
0501: TPSLAVSLIG DDSLMQVHPN GIRHIREDGR INEWRTPGKR SIVKVGYNRL QVVIALSGGE LIYFEADMTG QLMEVEKHEM SGDVACLDIA PVPEGRKRSR
0601: FLAVGSYDNT VRILSLDPDD CLQILSVQSV SSAPESLLFL EVQASIGGDD GADHPANLFL NSGLQNGVLF RTVVDMVTGQ LSDSRSRFLG LKPPKLFSIS
0701: VRGRSAMLCL SSRPWLGYIH RGHFHLTPLS YETLEFAAPF SSDQCAEGVV SVAGDALRIF MIDRLGETFN ETVVPLRYTP RKFVLHPKRK LLVIIESDQG
0801: AFTAEEREAA RKECFEAGGV GENGNGNADQ MENGADDEDK EDPLSDEQYG YPKAESEKWV SCIRVLDPKT ATTTCLLELQ DNEAAYSVCT VNFHDKEYGT
0901: LLAVGTVKGM QFWPKKNLVA GFIHIYRFVE DGKSLELLHK TQVEGVPLAL CQFQGRLLAG IGPVLRLYDL GKKRLLRKCE NKLFPNTIIS IQTYRDRIYV
1001: GDIQESFHYC KYRRDENQLY IFADDCVPRW LTASHHVDFD TMAGADKFGN VYFVRLPQDL SEEIEEDPTG GKIKWEQGKL NGAPNKVDEI VQFHVGDVVT
1101: CLQKASMIPG GSESIMYGTV MGSIGALHAF TSRDDVDFFS HLEMHMRQEY PPLCGRDHMA YRSAYFPVKD VIDGDLCEQF PTLPMDLQRK IADELDRTPA
1201: EILKKLEDAR NKII
Arabidopsis Description
SAP130ASpliceosome-associated protein 130 B [Source:UniProtKB/Swiss-Prot;Acc:P0DKL6]
SUBAcon: [vacuole,nucleus]
SUBAcon: [vacuole,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.