Factsheet for GSMUA_Achr6P19780_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	mitochondrion
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P30340_001	Banana	cytosol	64.99	90.71
Os02t0137400-01	Rice	nucleus	60.29	68.65
GSMUA_Achr9P30350_001	Banana	mitochondrion	19.96	67.71
VIT_00s0317g00100.t01	Wine grape	endoplasmic reticulum	84.03	67.63
PGSC0003DMT400077607	Potato	nucleus	82.29	66.39
CDY36325	Canola	nucleus, plastid, vacuole	80.04	65.88
KRH36214	Soybean	nucleus	81.68	65.73
KRG92964	Soybean	nucleus	81.58	65.65
AT3G55220.1	Thale cress	nucleus, vacuole	81.06	65.24
AT3G55200.1	Thale cress	nucleus, vacuole	81.06	65.24
CDY36309	Canola	cytosol, nucleus, plastid	78.51	64.94
Bra034172.1-P	Field mustard	nucleus, plastid, vacuole	80.66	64.91
Solyc04g010260.2.1	Tomato	nucleus	77.69	64.6
HORVU6Hr1G019130.1	Barley	mitochondrion	79.22	63.08
TraesCS6B01G135400.1	Wheat	unclear	79.22	63.08
TraesCS6D01G095000.1	Wheat	mitochondrion	79.12	63.0
EES04483	Sorghum	mitochondrion	79.43	62.99
TraesCS6A01G107200.1	Wheat	nucleus	79.02	62.92
Zm00001d015208_P003	Maize	extracellular, plasma membrane	78.81	62.65
VIT_15s0107g00230.t01	Wine grape	nucleus	7.88	59.23
VIT_15s0107g00220.t01	Wine grape	cytosol	8.19	55.17
GSMUA_Achr8P07200_001	Banana	cytosol, nucleus, plasma membrane	22.62	20.29
GSMUA_Achr9P11080_001	Banana	nucleus, plasma membrane, plastid	17.6	12.74

Protein Annotations

MapMan:16.4.1.2.4.3	Gene3D:2.130.10.10	InterPro:Cleavage/polyA-sp_fac_asu_C	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	EnsemblPlantsGene:GSMUA_Achr6G19780_001
EnsemblPlants:GSMUA_Achr6P19780_001	EnsemblPlants:GSMUA_Achr6T19780_001	InterPro:IPR015943	UniProt:M0T8H6	PFAM:PF03178	PFAM:PF10433
PANTHER:PTHR10644	PANTHER:PTHR10644:SF1	SUPFAM:SSF50978	UniParc:UPI000296C6F8	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat_dom_sf
SEG:seg	:	:	:	:	:

Description

Splicing factor 3B subunit 3 [Source:GMGC_GENE;Acc:GSMUA_Achr6G19780_001]

Coordinates

chr6:-:14057064..14063878

Molecular Weight (calculated)

107890.0 Da

IEP (calculated)

5.791

GRAVY (calculated)

-0.142

Length

977 amino acids

Sequence
(BLAST)

001: MYLYSLTLQQ AGGVVCATNG NFVGGKTQEI VVARGKTLDL LRPDDAGKLQ TLLSVEVFGA IRSLSQFRLT GSQKDYVVAV PSWPPPARSR NLVYVLNRDA
101: AARLTISSPL EAHKSHTITY SVVGVDCGFD NPVFAAIELD YSEADLDPTG QAAAEAQKHL TFYELDLGLN HVSRKWSEPV DNGANLLVTV PGGGDGPSGV
201: LVCAENFVIY KNQGHPDVRA VIPRRADLPA ERGVLIVSAA THRQKSISRS SILIPSPSPA LCVSSRPASS LLPLSLAIMH YTSSRPLGRL RMIDQIESLM
301: PIMDMRVMNL FEEETPQVFT LCGRGPRSSL RILRPGLAIN EMAVSQLPGT PSAVWTVKKN VNDEFDAYIV VSFVNATLVL SIGETIEEVS DSGFLDTTPS
401: LSVSLLGDDS LMQVHPNGIR HIREDGRINE WKTPGKKTIV KVGSNRLQVV IALSGGELIY FEMDMTGQQR SRFLAVGSYD NTIRILSLDP DDCMQILSVQ
501: SVSSPPESLL LLEVQASTGG EDGADHPASL SDTRSRFLGL RAPKLFSATV RGRQAMLCLS SRPWLGYIHQ GHFLLTPLSY ETLEYAASFS SDQCAEGVVA
601: EEKEDALSDE QYGYPKAESD KWVSCIRVLD PRTGNTTCLL ELQENEAAFS LCTVNFHDKE YGTLLAVGTA KGLQFWPKRS LAAGFIHIYR FVEEGKSLEL
701: VHKTQVEGVP LALFQFQGRL LAGIGSVLRL YDLGKRKLLR KCENKLFPNT IVSIHTYRDR IYVGDIQESF HYCKYRRDEN QLYIFADDSV PRWLTASHHI
801: DFDTMAGADK FGNVYFVRLS QDVSDEIEED PTGGKIKWEQ GKLNGAPNKV EEIVQFHVGD VVTCLQKASL IPGGGECVIY GTVMGSLGAL LPFTSREDVD
901: FFSHLEMHMR QEHPPLCGRD HMAFRSAYFP VKDVIDGDLC EQFPTLPPDL QRKIADELDR TPGEILKKLE DVRNKII

Best Arabidopsis Sequence Match ( AT3G55200.2 )
(BLAST)

0001: MYLYSLTLQQ ATGIVCAING NFSGGKTQEI AVARGKILDL LRPDENGKIQ TIHSVEVFGA IRSLAQFRLT GAQKDYIVVG SDSGRIVILE YNKEKNVFDK
0101: VHQETFGKSG CRRIVPGQYV AVDPKGRAVM IGACEKQKLV YVLNRDTTAR LTISSPLEAH KSHTICYSLC GVDCGFDNPI FAAIELDYSE ADQDPTGQAA
0201: SEAQKHLTFY ELDLGLNHVS RKWSNPVDNG ANMLVTVPGG ADGPSGVLVC AENFVIYMNQ GHPDVRAVIP RRTDLPAERG VLVVSAAVHK QKTMFFFLIQ
0301: TEYGDVFKVT LDHNGDHVSE LKVKYFDTIP VASSICVLKL GFLFSASEFG NHGLYQFQAI GEEPDVESSS SNLMETEEGF QPVFFQPRRL KNLVRIDQVE
0401: SLMPLMDMKV LNIFEEETPQ IFSLCGRGPR SSLRILRPGL AITEMAVSQL PGQPSAVWTV KKNVSDEFDA YIVVSFTNAT LVLSIGEQVE EVNDSGFLDT
0501: TPSLAVSLIG DDSLMQVHPN GIRHIREDGR INEWRTPGKR SIVKVGYNRL QVVIALSGGE LIYFEADMTG QLMEVEKHEM SGDVACLDIA PVPEGRKRSR
0601: FLAVGSYDNT VRILSLDPDD CLQILSVQSV SSAPESLLFL EVQASIGGDD GADHPANLFL NSGLQNGVLF RTVVDMVTGQ LSDSRSRFLG LKPPKLFSIS
0701: VRGRSAMLCL SSRPWLGYIH RGHFHLTPLS YETLEFAAPF SSDQCAEGVV SVAGDALRIF MIDRLGETFN ETVVPLRYTP RKFVLHPKRK LLVIIESDQG
0801: AFTAEEREAA RKECFEAGGV GENGNGNADQ MENGADDEDK EDPLSDEQYG YPKAESEKWV SCIRVLDPKT ATTTCLLELQ DNEAAYSVCT VNFHDKEYGT
0901: LLAVGTVKGM QFWPKKNLVA GFIHIYRFVE DGKSLELLHK TQVEGVPLAL CQFQGRLLAG IGPVLRLYDL GKKRLLRKCE NKLFPNTIIS IQTYRDRIYV
1001: GDIQESFHYC KYRRDENQLY IFADDCVPRW LTASHHVDFD TMAGADKFGN VYFVRLPQDL SEEIEEDPTG GKIKWEQGKL NGAPNKVDEI VQFHVGDVVT
1101: CLQKASMIPG GSESIMYGTV MGSIGALHAF TSRDDVDFFS HLEMHMRQEY PPLCGRDHMA YRSAYFPVKD VIDGDLCEQF PTLPMDLQRK IADELDRTPA
1201: EILKKLEDAR NKII

Arabidopsis Description

SAP130ASpliceosome-associated protein 130 B [Source:UniProtKB/Swiss-Prot;Acc:P0DKL6]
SUBAcon: [vacuole,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.