Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os02t0137400-01 | Rice | nucleus | 83.29 | 67.95 |
| GSMUA_Achr6P19780_001 | Banana | cytosol | 90.71 | 64.99 |
| VIT_15s0107g00230.t01 | Wine grape | nucleus | 11.14 | 60.0 |
| VIT_15s0107g00220.t01 | Wine grape | cytosol | 11.14 | 53.79 |
| VIT_00s0317g00100.t01 | Wine grape | endoplasmic reticulum | 87.43 | 50.41 |
| CDY36309 | Canola | cytosol, nucleus, plastid | 84.0 | 49.79 |
| CDY36325 | Canola | nucleus, plastid, vacuole | 84.14 | 49.62 |
| KRG92964 | Soybean | nucleus | 86.0 | 49.59 |
| KRH36214 | Soybean | nucleus | 85.71 | 49.42 |
| AT3G55220.1 | Thale cress | nucleus, vacuole | 84.29 | 48.6 |
| AT3G55200.1 | Thale cress | nucleus, vacuole | 84.29 | 48.6 |
| PGSC0003DMT400077607 | Potato | nucleus | 83.86 | 48.47 |
| Bra034172.1-P | Field mustard | nucleus, plastid, vacuole | 83.71 | 48.27 |
| HORVU6Hr1G019130.1 | Barley | mitochondrion | 84.29 | 48.08 |
| TraesCS6B01G135400.1 | Wheat | unclear | 84.29 | 48.08 |
| TraesCS6D01G095000.1 | Wheat | mitochondrion | 84.29 | 48.08 |
| TraesCS6A01G107200.1 | Wheat | nucleus | 84.14 | 48.0 |
| EES04483 | Sorghum | mitochondrion | 83.71 | 47.56 |
| Zm00001d015208_P003 | Maize | extracellular, plasma membrane | 82.86 | 47.19 |
| Solyc04g010260.2.1 | Tomato | nucleus | 78.14 | 46.55 |
| GSMUA_Achr8P07200_001 | Banana | cytosol, nucleus, plasma membrane | 25.0 | 16.07 |
| GSMUA_Achr9P11080_001 | Banana | nucleus, plasma membrane, plastid | 20.43 | 10.59 |
| GSMUA_Achr9P30350_001 | Banana | mitochondrion | 1.57 | 3.82 |
Protein Annotations
| MapMan:16.4.1.2.4.3 | Gene3D:2.130.10.10 | InterPro:Cleavage/polyA-sp_fac_asu_C | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSMUA_Achr9G30340_001 |
| EnsemblPlants:GSMUA_Achr9P30340_001 | EnsemblPlants:GSMUA_Achr9T30340_001 | InterPro:IPR015943 | UniProt:M0U4U1 | PFAM:PF03178 | PFAM:PF10433 |
| PANTHER:PTHR10644 | PANTHER:PTHR10644:SF1 | SUPFAM:SSF50978 | UniParc:UPI000294C737 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat_dom_sf |
| SEG:seg | : | : | : | : | : |
Description
Putative Pre-mRNA-splicing factor rse1 [Source:GMGC_GENE;Acc:GSMUA_Achr9G30340_001]
Coordinates
chr9:-:33643360..33648629
Molecular Weight (calculated)
78461.1 Da
IEP (calculated)
4.984
GRAVY (calculated)
-0.186
Length
700 amino acids
Sequence
(BLAST)
(BLAST)
001: METEEGFQPV FFQPRGLKNL VRIDQVESLM PIMDMRVMNL FEEETPQVFT LCGRGPRSSL RILRPGLAIN EMAVSQLPGT PSAVWTVKKN VNDEFDAYIV
101: VSFVNATLVL SIGETIEEVS DSGFLDTTPS LSVSLLGDDS LMQVHPNGIR HIREDGRINE WKTPGKKTIV KVGLNRLQVV IALSGGELIY FEMDMTGQHR
201: SRFLAVGSYD NTIRILSLDP DDCMQILSVQ SVSSPPESLL LLEVQASTGG EDGADHPASL SDTRSRFLGL RAPKLFSATG HFLLTPLSYE TLEYAASFSS
301: DQCAEGVVAV AGEALRIFTI ERLGETFNET VVPLRQQMEN ESDKWVSCIR VLDPRTGNTT CLLELQENEA AFSLCTVNFH DKEYGTLLAV GTAKGLQFWP
401: KRSLAAGFIH IYRFVEEGKS LELVHKTQVE GVPLTLCQYQ GRLLAGIGSV LRLYDLGKRR LLRKCENKLF PNTIVSMHTY RDRIYVGDIQ ESFHYCKYRR
501: DENQLYIFAD DSVPRWLTAS HHIDFDTMAG ADKFGNIYFV RLPQDLSDEI EEDPTGGKIK WEQGKLNGAP NKMEEIVQFH VGDVVTCLQK ASLIPGGGEC
601: VIYGTVMGSL GALLPFTSRE DVDFFSHLEM HMRQEHPPLC GRDHMAFRSA YFPVKDVIDG DLCEQFPTLP PDLQRKIADE LDRTPGEILK KLEDVRNKII
101: VSFVNATLVL SIGETIEEVS DSGFLDTTPS LSVSLLGDDS LMQVHPNGIR HIREDGRINE WKTPGKKTIV KVGLNRLQVV IALSGGELIY FEMDMTGQHR
201: SRFLAVGSYD NTIRILSLDP DDCMQILSVQ SVSSPPESLL LLEVQASTGG EDGADHPASL SDTRSRFLGL RAPKLFSATG HFLLTPLSYE TLEYAASFSS
301: DQCAEGVVAV AGEALRIFTI ERLGETFNET VVPLRQQMEN ESDKWVSCIR VLDPRTGNTT CLLELQENEA AFSLCTVNFH DKEYGTLLAV GTAKGLQFWP
401: KRSLAAGFIH IYRFVEEGKS LELVHKTQVE GVPLTLCQYQ GRLLAGIGSV LRLYDLGKRR LLRKCENKLF PNTIVSMHTY RDRIYVGDIQ ESFHYCKYRR
501: DENQLYIFAD DSVPRWLTAS HHIDFDTMAG ADKFGNIYFV RLPQDLSDEI EEDPTGGKIK WEQGKLNGAP NKMEEIVQFH VGDVVTCLQK ASLIPGGGEC
601: VIYGTVMGSL GALLPFTSRE DVDFFSHLEM HMRQEHPPLC GRDHMAFRSA YFPVKDVIDG DLCEQFPTLP PDLQRKIADE LDRTPGEILK KLEDVRNKII
0001: MYLYSLTLQQ ATGIVCAING NFSGGKTQEI AVARGKILDL LRPDENGKIQ TIHSVEVFGA IRSLAQFRLT GAQKDYIVVG SDSGRIVILE YNKEKNVFDK
0101: VHQETFGKSG CRRIVPGQYV AVDPKGRAVM IGACEKQKLV YVLNRDTTAR LTISSPLEAH KSHTICYSLC GVDCGFDNPI FAAIELDYSE ADQDPTGQAA
0201: SEAQKHLTFY ELDLGLNHVS RKWSNPVDNG ANMLVTVPGG ADGPSGVLVC AENFVIYMNQ GHPDVRAVIP RRTDLPAERG VLVVSAAVHK QKTMFFFLIQ
0301: TEYGDVFKVT LDHNGDHVSE LKVKYFDTIP VASSICVLKL GFLFSASEFG NHGLYQFQAI GEEPDVESSS SNLMETEEGF QPVFFQPRRL KNLVRIDQVE
0401: SLMPLMDMKV LNIFEEETPQ IFSLCGRGPR SSLRILRPGL AITEMAVSQL PGQPSAVWTV KKNVSDEFDA YIVVSFTNAT LVLSIGEQVE EVNDSGFLDT
0501: TPSLAVSLIG DDSLMQVHPN GIRHIREDGR INEWRTPGKR SIVKVGYNRL QVVIALSGGE LIYFEADMTG QLMEVEKHEM SGDVACLDIA PVPEGRKRSR
0601: FLAVGSYDNT VRILSLDPDD CLQILSVQSV SSAPESLLFL EVQASIGGDD GADHPANLFL NSGLQNGVLF RTVVDMVTGQ LSDSRSRFLG LKPPKLFSIS
0701: VRGRSAMLCL SSRPWLGYIH RGHFHLTPLS YETLEFAAPF SSDQCAEGVV SVAGDALRIF MIDRLGETFN ETVVPLRYTP RKFVLHPKRK LLVIIESDQG
0801: AFTAEEREAA RKECFEAGGV GENGNGNADQ MENGADDEDK EDPLSDEQYG YPKAESEKWV SCIRVLDPKT ATTTCLLELQ DNEAAYSVCT VNFHDKEYGT
0901: LLAVGTVKGM QFWPKKNLVA GFIHIYRFVE DGKSLELLHK TQVEGVPLAL CQFQGRLLAG IGPVLRLYDL GKKRLLRKCE NKLFPNTIIS IQTYRDRIYV
1001: GDIQESFHYC KYRRDENQLY IFADDCVPRW LTASHHVDFD TMAGADKFGN VYFVRLPQDL SEEIEEDPTG GKIKWEQGKL NGAPNKVDEI VQFHVGDVVT
1101: CLQKASMIPG GSESIMYGTV MGSIGALHAF TSRDDVDFFS HLEMHMRQEY PPLCGRDHMA YRSAYFPVKD VIDGDLCEQF PTLPMDLQRK IADELDRTPA
1201: EILKKLEDAR NKII
0101: VHQETFGKSG CRRIVPGQYV AVDPKGRAVM IGACEKQKLV YVLNRDTTAR LTISSPLEAH KSHTICYSLC GVDCGFDNPI FAAIELDYSE ADQDPTGQAA
0201: SEAQKHLTFY ELDLGLNHVS RKWSNPVDNG ANMLVTVPGG ADGPSGVLVC AENFVIYMNQ GHPDVRAVIP RRTDLPAERG VLVVSAAVHK QKTMFFFLIQ
0301: TEYGDVFKVT LDHNGDHVSE LKVKYFDTIP VASSICVLKL GFLFSASEFG NHGLYQFQAI GEEPDVESSS SNLMETEEGF QPVFFQPRRL KNLVRIDQVE
0401: SLMPLMDMKV LNIFEEETPQ IFSLCGRGPR SSLRILRPGL AITEMAVSQL PGQPSAVWTV KKNVSDEFDA YIVVSFTNAT LVLSIGEQVE EVNDSGFLDT
0501: TPSLAVSLIG DDSLMQVHPN GIRHIREDGR INEWRTPGKR SIVKVGYNRL QVVIALSGGE LIYFEADMTG QLMEVEKHEM SGDVACLDIA PVPEGRKRSR
0601: FLAVGSYDNT VRILSLDPDD CLQILSVQSV SSAPESLLFL EVQASIGGDD GADHPANLFL NSGLQNGVLF RTVVDMVTGQ LSDSRSRFLG LKPPKLFSIS
0701: VRGRSAMLCL SSRPWLGYIH RGHFHLTPLS YETLEFAAPF SSDQCAEGVV SVAGDALRIF MIDRLGETFN ETVVPLRYTP RKFVLHPKRK LLVIIESDQG
0801: AFTAEEREAA RKECFEAGGV GENGNGNADQ MENGADDEDK EDPLSDEQYG YPKAESEKWV SCIRVLDPKT ATTTCLLELQ DNEAAYSVCT VNFHDKEYGT
0901: LLAVGTVKGM QFWPKKNLVA GFIHIYRFVE DGKSLELLHK TQVEGVPLAL CQFQGRLLAG IGPVLRLYDL GKKRLLRKCE NKLFPNTIIS IQTYRDRIYV
1001: GDIQESFHYC KYRRDENQLY IFADDCVPRW LTASHHVDFD TMAGADKFGN VYFVRLPQDL SEEIEEDPTG GKIKWEQGKL NGAPNKVDEI VQFHVGDVVT
1101: CLQKASMIPG GSESIMYGTV MGSIGALHAF TSRDDVDFFS HLEMHMRQEY PPLCGRDHMA YRSAYFPVKD VIDGDLCEQF PTLPMDLQRK IADELDRTPA
1201: EILKKLEDAR NKII
Arabidopsis Description
SAP130ASpliceosome-associated protein 130 B [Source:UniProtKB/Swiss-Prot;Acc:P0DKL6]
SUBAcon: [vacuole,nucleus]
SUBAcon: [vacuole,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.