Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- endoplasmic reticulum 4
- extracellular 2
- vacuole 3
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG92964 | Soybean | nucleus | 91.35 | 91.35 |
| KRH36214 | Soybean | nucleus | 91.35 | 91.35 |
| PGSC0003DMT400077607 | Potato | nucleus | 91.1 | 91.33 |
| Solyc04g010260.2.1 | Tomato | nucleus | 86.66 | 89.53 |
| AT3G55220.1 | Thale cress | nucleus, vacuole | 89.46 | 89.46 |
| AT3G55200.1 | Thale cress | nucleus, vacuole | 89.46 | 89.46 |
| Bra034172.1-P | Field mustard | nucleus, plastid, vacuole | 89.13 | 89.13 |
| CDY36309 | Canola | cytosol, nucleus, plastid | 86.0 | 88.4 |
| CDY36325 | Canola | nucleus, plastid, vacuole | 86.33 | 88.29 |
| GSMUA_Achr9P30340_001 | Banana | cytosol | 50.41 | 87.43 |
| GSMUA_Achr6P19780_001 | Banana | cytosol | 67.63 | 84.03 |
| Os02t0137400-01 | Rice | nucleus | 58.9 | 83.33 |
| HORVU6Hr1G019130.1 | Barley | mitochondrion | 82.78 | 81.91 |
| TraesCS6B01G135400.1 | Wheat | unclear | 82.37 | 81.5 |
| Zm00001d015208_P003 | Maize | extracellular, plasma membrane | 82.45 | 81.45 |
| TraesCS6D01G095000.1 | Wheat | mitochondrion | 82.29 | 81.42 |
| TraesCS6A01G107200.1 | Wheat | nucleus | 82.21 | 81.34 |
| EES04483 | Sorghum | mitochondrion | 82.13 | 80.93 |
| VIT_15s0107g00230.t01 | Wine grape | nucleus | 8.65 | 80.77 |
| VIT_15s0107g00220.t01 | Wine grape | cytosol | 8.73 | 73.1 |
| VIT_10s0003g04360.t01 | Wine grape | cytosol, nucleus, plasma membrane | 20.92 | 23.32 |
| VIT_15s0024g01220.t01 | Wine grape | cytosol | 1.98 | 22.02 |
| VIT_08s0007g07150.t01 | Wine grape | cytosol, nucleus, plasma membrane | 19.19 | 17.09 |
Protein Annotations
| EntrezGene:100255210 | wikigene:100255210 | MapMan:16.4.1.2.4.3 | Gene3D:2.130.10.10 | EMBL:AM428593 | ProteinID:CAN64633 |
| ProteinID:CAN64633.1 | ProteinID:CCB57374 | ProteinID:CCB57374.1 | InterPro:Cleavage/polyA-sp_fac_asu_C | ncoils:Coil | UniProt:F6HRR6 |
| EMBL:FN596030 | GO:GO:0000398 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 |
| GO:GO:0004190 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006508 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016787 | GO:GO:0019538 | InterPro:IPR015943 | EntrezGene:LOC100255210 | wikigene:LOC100255210 | PFAM:PF03178 |
| PFAM:PF10433 | PANTHER:PTHR10644 | PANTHER:PTHR10644:SF1 | SUPFAM:SSF69322 | UniParc:UPI00019847AA | ArrayExpress:VIT_00s0317g00100 |
| EnsemblPlantsGene:VIT_00s0317g00100 | EnsemblPlants:VIT_00s0317g00100.t01 | unigene:Vvi.4391 | InterPro:WD40/YVTN_repeat-like_dom_sf | RefSeq:XP_002282354 | RefSeq:XP_002282354.1 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chrUn:+:23032839..23038949
Molecular Weight (calculated)
134764.0 Da
IEP (calculated)
4.991
GRAVY (calculated)
-0.153
Length
1214 amino acids
Sequence
(BLAST)
(BLAST)
0001: MYLYSLTLQQ ATGIVCAING NFSGGKSQEI VVARGKVLDL LRPDENGKIQ TILSVEIFGA IRSLAQFRLT GSQKDYIVVG SDSGRIVILE YNKEKNVFDK
0101: IHQETFGKSG CRRIVPGQYL AIDPKGRAVM IGACEKQKLV YVLNRDTVAR LTISSPLEAH KSHTIVYSIT GVDCGFDNPI FAAIELDYSE ADQDSTGQAA
0201: SEAQKHLTFY ELDLGLNHVS RKWSEQVDNG ANMLVTVPGG GDGPSGVLVC AENFVIYKNQ GHPDVRAVIP RRADLPAERG VLIVSAATHR QKSMFFFLLQ
0301: TEYGDVFKVT LEHENDRISE LKIKYFDTIP VTSSMCVLKS GFLFAASEFG NHGLYQFQAI GDDADVESSS ASLMETEEGF QPVFFQPRGL KNLVRIDQVE
0401: SLMPIMDMKV SNLFEEETPQ IFALCGRGPR SSIRILRPGL AISEMAVSQL PGVPSAVWTV KKNVNDEFDA YIVVSFANAT LVLSIGETVE EVSDSGFLDT
0501: TPSLAVSLIG DDSLMQVHPS GIRHIREDGR INEWRTPGKR TIVKVGSNRL QVVIALSGGE LIYFEVDMTG QLMEVEKHEM SGDVACLDIA PVPEGRQRSR
0601: FLAVGSYDNT IRILSLDPDD CMQILSVQSV SSPPESLLFL EVQASVGGED GADHPASLFL NAGLQNGVLF RTVVDMVTGQ LSDARSRFLG LRAPKLFSVI
0701: VRGRRAMLCL SSRPWLGYIH QGHFLLTPLS YETLEFAASF SSDQCAEGVV AVAGDALRVF TIERLGETFN ETVIPLRYTP RKFVLQPKRK LLVVIESDQG
0801: AFAAEEREAA KKECFEAAGM GENGNGNVEQ MENGGDDEDK DDPLSDEQYG YPKAESDKWV SCIRILDPRT ATTTCLLELQ DNEAAFSICT VNFHDKEYGT
0901: LLAVGTAKSL QFWPKRSFDA GYIHIYRFLE DGKSLELLHK TQVEGVPLAL CQFQGRLLAG IGSVLRLYDL GKRRLLRKCE NKLFPNTIVS IHTYRDRIYV
1001: GDIQESFHYC KYRRDENQLY IFADDSVPRW LTASYHIDFD TMAGADKFGN IYFVRLPQDV SDEVEEDPTG GKIKWEQGKL NGAPNKVEEI VQFHVGDVVT
1101: CLQKASLIPG GGECIIYGTV MGSLGALLAF TSRDDVDFFS HLEMHMRQEH PPLCGRDHMA YRSAYFPVKD VIDGDLCEQF PTLPLDLQRK IADELDRTPG
1201: EILKKLEEVR NKII
0101: IHQETFGKSG CRRIVPGQYL AIDPKGRAVM IGACEKQKLV YVLNRDTVAR LTISSPLEAH KSHTIVYSIT GVDCGFDNPI FAAIELDYSE ADQDSTGQAA
0201: SEAQKHLTFY ELDLGLNHVS RKWSEQVDNG ANMLVTVPGG GDGPSGVLVC AENFVIYKNQ GHPDVRAVIP RRADLPAERG VLIVSAATHR QKSMFFFLLQ
0301: TEYGDVFKVT LEHENDRISE LKIKYFDTIP VTSSMCVLKS GFLFAASEFG NHGLYQFQAI GDDADVESSS ASLMETEEGF QPVFFQPRGL KNLVRIDQVE
0401: SLMPIMDMKV SNLFEEETPQ IFALCGRGPR SSIRILRPGL AISEMAVSQL PGVPSAVWTV KKNVNDEFDA YIVVSFANAT LVLSIGETVE EVSDSGFLDT
0501: TPSLAVSLIG DDSLMQVHPS GIRHIREDGR INEWRTPGKR TIVKVGSNRL QVVIALSGGE LIYFEVDMTG QLMEVEKHEM SGDVACLDIA PVPEGRQRSR
0601: FLAVGSYDNT IRILSLDPDD CMQILSVQSV SSPPESLLFL EVQASVGGED GADHPASLFL NAGLQNGVLF RTVVDMVTGQ LSDARSRFLG LRAPKLFSVI
0701: VRGRRAMLCL SSRPWLGYIH QGHFLLTPLS YETLEFAASF SSDQCAEGVV AVAGDALRVF TIERLGETFN ETVIPLRYTP RKFVLQPKRK LLVVIESDQG
0801: AFAAEEREAA KKECFEAAGM GENGNGNVEQ MENGGDDEDK DDPLSDEQYG YPKAESDKWV SCIRILDPRT ATTTCLLELQ DNEAAFSICT VNFHDKEYGT
0901: LLAVGTAKSL QFWPKRSFDA GYIHIYRFLE DGKSLELLHK TQVEGVPLAL CQFQGRLLAG IGSVLRLYDL GKRRLLRKCE NKLFPNTIVS IHTYRDRIYV
1001: GDIQESFHYC KYRRDENQLY IFADDSVPRW LTASYHIDFD TMAGADKFGN IYFVRLPQDV SDEVEEDPTG GKIKWEQGKL NGAPNKVEEI VQFHVGDVVT
1101: CLQKASLIPG GGECIIYGTV MGSLGALLAF TSRDDVDFFS HLEMHMRQEH PPLCGRDHMA YRSAYFPVKD VIDGDLCEQF PTLPLDLQRK IADELDRTPG
1201: EILKKLEEVR NKII
0001: MYLYSLTLQQ ATGIVCAING NFSGGKTQEI AVARGKILDL LRPDENGKIQ TIHSVEVFGA IRSLAQFRLT GAQKDYIVVG SDSGRIVILE YNKEKNVFDK
0101: VHQETFGKSG CRRIVPGQYV AVDPKGRAVM IGACEKQKLV YVLNRDTTAR LTISSPLEAH KSHTICYSLC GVDCGFDNPI FAAIELDYSE ADQDPTGQAA
0201: SEAQKHLTFY ELDLGLNHVS RKWSNPVDNG ANMLVTVPGG ADGPSGVLVC AENFVIYMNQ GHPDVRAVIP RRTDLPAERG VLVVSAAVHK QKTMFFFLIQ
0301: TEYGDVFKVT LDHNGDHVSE LKVKYFDTIP VASSICVLKL GFLFSASEFG NHGLYQFQAI GEEPDVESSS SNLMETEEGF QPVFFQPRRL KNLVRIDQVE
0401: SLMPLMDMKV LNIFEEETPQ IFSLCGRGPR SSLRILRPGL AITEMAVSQL PGQPSAVWTV KKNVSDEFDA YIVVSFTNAT LVLSIGEQVE EVNDSGFLDT
0501: TPSLAVSLIG DDSLMQVHPN GIRHIREDGR INEWRTPGKR SIVKVGYNRL QVVIALSGGE LIYFEADMTG QLMEVEKHEM SGDVACLDIA PVPEGRKRSR
0601: FLAVGSYDNT VRILSLDPDD CLQILSVQSV SSAPESLLFL EVQASIGGDD GADHPANLFL NSGLQNGVLF RTVVDMVTGQ LSDSRSRFLG LKPPKLFSIS
0701: VRGRSAMLCL SSRPWLGYIH RGHFHLTPLS YETLEFAAPF SSDQCAEGVV SVAGDALRIF MIDRLGETFN ETVVPLRYTP RKFVLHPKRK LLVIIESDQG
0801: AFTAEEREAA RKECFEAGGV GENGNGNADQ MENGADDEDK EDPLSDEQYG YPKAESEKWV SCIRVLDPKT ATTTCLLELQ DNEAAYSVCT VNFHDKEYGT
0901: LLAVGTVKGM QFWPKKNLVA GFIHIYRFVE DGKSLELLHK TQVEGVPLAL CQFQGRLLAG IGPVLRLYDL GKKRLLRKCE NKLFPNTIIS IQTYRDRIYV
1001: GDIQESFHYC KYRRDENQLY IFADDCVPRW LTASHHVDFD TMAGADKFGN VYFVRLPQDL SEEIEEDPTG GKIKWEQGKL NGAPNKVDEI VQFHVGDVVT
1101: CLQKASMIPG GSESIMYGTV MGSIGALHAF TSRDDVDFFS HLEMHMRQEY PPLCGRDHMA YRSAYFPVKD VIDGDLCEQF PTLPMDLQRK IADELDRTPA
1201: EILKKLEDAR NKII
0101: VHQETFGKSG CRRIVPGQYV AVDPKGRAVM IGACEKQKLV YVLNRDTTAR LTISSPLEAH KSHTICYSLC GVDCGFDNPI FAAIELDYSE ADQDPTGQAA
0201: SEAQKHLTFY ELDLGLNHVS RKWSNPVDNG ANMLVTVPGG ADGPSGVLVC AENFVIYMNQ GHPDVRAVIP RRTDLPAERG VLVVSAAVHK QKTMFFFLIQ
0301: TEYGDVFKVT LDHNGDHVSE LKVKYFDTIP VASSICVLKL GFLFSASEFG NHGLYQFQAI GEEPDVESSS SNLMETEEGF QPVFFQPRRL KNLVRIDQVE
0401: SLMPLMDMKV LNIFEEETPQ IFSLCGRGPR SSLRILRPGL AITEMAVSQL PGQPSAVWTV KKNVSDEFDA YIVVSFTNAT LVLSIGEQVE EVNDSGFLDT
0501: TPSLAVSLIG DDSLMQVHPN GIRHIREDGR INEWRTPGKR SIVKVGYNRL QVVIALSGGE LIYFEADMTG QLMEVEKHEM SGDVACLDIA PVPEGRKRSR
0601: FLAVGSYDNT VRILSLDPDD CLQILSVQSV SSAPESLLFL EVQASIGGDD GADHPANLFL NSGLQNGVLF RTVVDMVTGQ LSDSRSRFLG LKPPKLFSIS
0701: VRGRSAMLCL SSRPWLGYIH RGHFHLTPLS YETLEFAAPF SSDQCAEGVV SVAGDALRIF MIDRLGETFN ETVVPLRYTP RKFVLHPKRK LLVIIESDQG
0801: AFTAEEREAA RKECFEAGGV GENGNGNADQ MENGADDEDK EDPLSDEQYG YPKAESEKWV SCIRVLDPKT ATTTCLLELQ DNEAAYSVCT VNFHDKEYGT
0901: LLAVGTVKGM QFWPKKNLVA GFIHIYRFVE DGKSLELLHK TQVEGVPLAL CQFQGRLLAG IGPVLRLYDL GKKRLLRKCE NKLFPNTIIS IQTYRDRIYV
1001: GDIQESFHYC KYRRDENQLY IFADDCVPRW LTASHHVDFD TMAGADKFGN VYFVRLPQDL SEEIEEDPTG GKIKWEQGKL NGAPNKVDEI VQFHVGDVVT
1101: CLQKASMIPG GSESIMYGTV MGSIGALHAF TSRDDVDFFS HLEMHMRQEY PPLCGRDHMA YRSAYFPVKD VIDGDLCEQF PTLPMDLQRK IADELDRTPA
1201: EILKKLEDAR NKII
Arabidopsis Description
SAP130ASpliceosome-associated protein 130 B [Source:UniProtKB/Swiss-Prot;Acc:P0DKL6]
SUBAcon: [vacuole,nucleus]
SUBAcon: [vacuole,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.