Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 6
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
26228564
|
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G095000.1 | Wheat | mitochondrion | 99.76 | 99.76 |
| TraesCS6B01G135400.1 | Wheat | unclear | 99.59 | 99.59 |
| HORVU6Hr1G019130.1 | Barley | mitochondrion | 99.1 | 99.1 |
| EES04483 | Sorghum | mitochondrion | 94.78 | 94.4 |
| Zm00001d015208_P003 | Maize | extracellular, plasma membrane | 93.81 | 93.65 |
| Os02t0137400-01 | Rice | nucleus | 65.36 | 93.47 |
| GSMUA_Achr9P30340_001 | Banana | cytosol | 48.0 | 84.14 |
| VIT_00s0317g00100.t01 | Wine grape | endoplasmic reticulum | 81.34 | 82.21 |
| KRH36214 | Soybean | nucleus | 80.36 | 81.22 |
| PGSC0003DMT400077607 | Potato | nucleus | 79.79 | 80.84 |
| KRG92964 | Soybean | nucleus | 79.87 | 80.72 |
| Solyc04g010260.2.1 | Tomato | nucleus | 76.94 | 80.34 |
| CDY36309 | Canola | cytosol, nucleus, plastid | 77.26 | 80.27 |
| CDY36325 | Canola | nucleus, plastid, vacuole | 77.51 | 80.12 |
| AT3G55200.1 | Thale cress | nucleus, vacuole | 79.14 | 79.98 |
| AT3G55220.1 | Thale cress | nucleus, vacuole | 79.14 | 79.98 |
| Bra034172.1-P | Field mustard | nucleus, plastid, vacuole | 78.57 | 79.41 |
| GSMUA_Achr6P19780_001 | Banana | cytosol | 62.92 | 79.02 |
| VIT_15s0107g00230.t01 | Wine grape | nucleus | 7.33 | 69.23 |
| VIT_15s0107g00220.t01 | Wine grape | cytosol | 7.42 | 62.76 |
| TraesCS3A01G210100.2 | Wheat | nucleus | 19.15 | 21.62 |
| TraesCS2A01G243300.3 | Wheat | plastid | 17.28 | 15.58 |
Protein Annotations
| MapMan:16.4.1.2.4.3 | Gene3D:2.130.10.10 | InterPro:Cleavage/polyA-sp_fac_asu_C | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| InterPro:IPR015943 | PFAM:PF03178 | PFAM:PF10433 | PANTHER:PTHR10644 | PANTHER:PTHR10644:SF1 | SUPFAM:SSF50978 |
| SUPFAM:SSF63829 | EnsemblPlantsGene:TraesCS6A01G107200 | EnsemblPlants:TraesCS6A01G107200.1 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat_dom_sf | SEG:seg |
Description
No Description!
Coordinates
chr6A:+:75365524..75370938
Molecular Weight (calculated)
135763.0 Da
IEP (calculated)
5.365
GRAVY (calculated)
-0.183
Length
1227 amino acids
Sequence
(BLAST)
(BLAST)
0001: MYLYSLTLQR ATGAVCAVIG SFSGRDSKKS NAAGSSTQEI AVARGGTLDL LRPDPETGRL RTLLSVDVFG AIRSLAQFRL TGATKDYLVV GSDSGRLVIL
0101: EYSPDRNRFD KVHQETFGKS GCRRIVPGQL LSVDPKGRAL CIAALEKQKL VYVLNRDASA RLTISSPLEA HKSHTLTFAL TALDCGFDNP VFGAIELEYG
0201: DSDRDPTGQA ASHAQKLLTF YELDLGLNHV SRKVSEPIDN GANMLVTVPG GADGPSGLLV CCDNFILYRN QGHPEVRAVI PRRVDLPAER GVLIVAAATH
0301: RQKSLFFFLL QTEYGDIFKV DLDHHGDTVS ELRIKYFDTI PVASAICVLR SGFLFAASEF GNHALYQFRD IGRDVDVESS SATLMETEEG FQPVFFQPRA
0401: LKNLVRIDEI ESLMPIMDMR IANLFDEETP QVYTACGRGS RSTLRILRPG LAISEMARSM LPAEPIAVWT VKKNINDMFD AYIVVSFANV TLVLSIGETI
0501: EEVSDSQFLD TTHSLAVSLL GEDSLMQVHP NGIRHIREDG RVNEWRTPGK KTITKVGSNR LQVVIALSGG ELIYFEMDMT GQLMEVEKQD MSGDVACLAI
0601: APVPEGRQRS RFLAVGSYDN TIRILSLDPD DCLQPLSVQS VSSAPESLLF LEVQASVGGE DGADYPANLF LNAGLQNGVL FRTNVDMVTG QLSDTRSRFL
0701: GLRPPKLFPC IVSHRQAMLC LSSRPWLGYI HQGHFLLTPL SCDTLESAAS FSSDQCSEGV VAVAGDALRI FTIERLGETF NETSIPLRYT PRKFVILPKK
0801: KYLAVIESDK GAFSAEQREA AKKECLEAAG AAENGNGNGD QMENGDGQED GEESNALPDE QYGYPKAESE KWASCIRILD PRSRDTTCLL ELQDNEAAVS
0901: ICTVNFHDKE HGTLLAVGTT KGLQFWPKRS LASGFIHIYK FVNEGKSLEL LHKTQVEEVP LSLCQFQGRL LAGVGSVLRL YDLGKRKLLR KCENKLFPRT
1001: IVSIHTYRDR IYVGDMQESF HYCKYRRDEN QLYIFADDSV PRWLTAANHI DFDTMAGADK FGNIYFARLP QDLSDEIEED PTGGKIKWEQ GKLNGAPNKV
1101: EEIVQFHVGD VVTCLQKASL IPGGGECLIY GTVMGSVGAL LAFTSREDVD FFSHLEMHLR QEHPPLCGRD HMAYRSAYFP VKDVIDGDLC EQYPALPADM
1201: QRKIADELDR TPGEILKKLE DIRNKII
0101: EYSPDRNRFD KVHQETFGKS GCRRIVPGQL LSVDPKGRAL CIAALEKQKL VYVLNRDASA RLTISSPLEA HKSHTLTFAL TALDCGFDNP VFGAIELEYG
0201: DSDRDPTGQA ASHAQKLLTF YELDLGLNHV SRKVSEPIDN GANMLVTVPG GADGPSGLLV CCDNFILYRN QGHPEVRAVI PRRVDLPAER GVLIVAAATH
0301: RQKSLFFFLL QTEYGDIFKV DLDHHGDTVS ELRIKYFDTI PVASAICVLR SGFLFAASEF GNHALYQFRD IGRDVDVESS SATLMETEEG FQPVFFQPRA
0401: LKNLVRIDEI ESLMPIMDMR IANLFDEETP QVYTACGRGS RSTLRILRPG LAISEMARSM LPAEPIAVWT VKKNINDMFD AYIVVSFANV TLVLSIGETI
0501: EEVSDSQFLD TTHSLAVSLL GEDSLMQVHP NGIRHIREDG RVNEWRTPGK KTITKVGSNR LQVVIALSGG ELIYFEMDMT GQLMEVEKQD MSGDVACLAI
0601: APVPEGRQRS RFLAVGSYDN TIRILSLDPD DCLQPLSVQS VSSAPESLLF LEVQASVGGE DGADYPANLF LNAGLQNGVL FRTNVDMVTG QLSDTRSRFL
0701: GLRPPKLFPC IVSHRQAMLC LSSRPWLGYI HQGHFLLTPL SCDTLESAAS FSSDQCSEGV VAVAGDALRI FTIERLGETF NETSIPLRYT PRKFVILPKK
0801: KYLAVIESDK GAFSAEQREA AKKECLEAAG AAENGNGNGD QMENGDGQED GEESNALPDE QYGYPKAESE KWASCIRILD PRSRDTTCLL ELQDNEAAVS
0901: ICTVNFHDKE HGTLLAVGTT KGLQFWPKRS LASGFIHIYK FVNEGKSLEL LHKTQVEEVP LSLCQFQGRL LAGVGSVLRL YDLGKRKLLR KCENKLFPRT
1001: IVSIHTYRDR IYVGDMQESF HYCKYRRDEN QLYIFADDSV PRWLTAANHI DFDTMAGADK FGNIYFARLP QDLSDEIEED PTGGKIKWEQ GKLNGAPNKV
1101: EEIVQFHVGD VVTCLQKASL IPGGGECLIY GTVMGSVGAL LAFTSREDVD FFSHLEMHLR QEHPPLCGRD HMAYRSAYFP VKDVIDGDLC EQYPALPADM
1201: QRKIADELDR TPGEILKKLE DIRNKII
0001: MYLYSLTLQQ ATGIVCAING NFSGGKTQEI AVARGKILDL LRPDENGKIQ TIHSVEVFGA IRSLAQFRLT GAQKDYIVVG SDSGRIVILE YNKEKNVFDK
0101: VHQETFGKSG CRRIVPGQYV AVDPKGRAVM IGACEKQKLV YVLNRDTTAR LTISSPLEAH KSHTICYSLC GVDCGFDNPI FAAIELDYSE ADQDPTGQAA
0201: SEAQKHLTFY ELDLGLNHVS RKWSNPVDNG ANMLVTVPGG ADGPSGVLVC AENFVIYMNQ GHPDVRAVIP RRTDLPAERG VLVVSAAVHK QKTMFFFLIQ
0301: TEYGDVFKVT LDHNGDHVSE LKVKYFDTIP VASSICVLKL GFLFSASEFG NHGLYQFQAI GEEPDVESSS SNLMETEEGF QPVFFQPRRL KNLVRIDQVE
0401: SLMPLMDMKV LNIFEEETPQ IFSLCGRGPR SSLRILRPGL AITEMAVSQL PGQPSAVWTV KKNVSDEFDA YIVVSFTNAT LVLSIGEQVE EVNDSGFLDT
0501: TPSLAVSLIG DDSLMQVHPN GIRHIREDGR INEWRTPGKR SIVKVGYNRL QVVIALSGGE LIYFEADMTG QLMEVEKHEM SGDVACLDIA PVPEGRKRSR
0601: FLAVGSYDNT VRILSLDPDD CLQILSVQSV SSAPESLLFL EVQASIGGDD GADHPANLFL NSGLQNGVLF RTVVDMVTGQ LSDSRSRFLG LKPPKLFSIS
0701: VRGRSAMLCL SSRPWLGYIH RGHFHLTPLS YETLEFAAPF SSDQCAEGVV SVAGDALRIF MIDRLGETFN ETVVPLRYTP RKFVLHPKRK LLVIIESDQG
0801: AFTAEEREAA RKECFEAGGV GENGNGNADQ MENGADDEDK EDPLSDEQYG YPKAESEKWV SCIRVLDPKT ATTTCLLELQ DNEAAYSVCT VNFHDKEYGT
0901: LLAVGTVKGM QFWPKKNLVA GFIHIYRFVE DGKSLELLHK TQVEGVPLAL CQFQGRLLAG IGPVLRLYDL GKKRLLRKCE NKLFPNTIIS IQTYRDRIYV
1001: GDIQESFHYC KYRRDENQLY IFADDCVPRW LTASHHVDFD TMAGADKFGN VYFVRLPQDL SEEIEEDPTG GKIKWEQGKL NGAPNKVDEI VQFHVGDVVT
1101: CLQKASMIPG GSESIMYGTV MGSIGALHAF TSRDDVDFFS HLEMHMRQEY PPLCGRDHMA YRSAYFPVKD VIDGDLCEQF PTLPMDLQRK IADELDRTPA
1201: EILKKLEDAR NKII
0101: VHQETFGKSG CRRIVPGQYV AVDPKGRAVM IGACEKQKLV YVLNRDTTAR LTISSPLEAH KSHTICYSLC GVDCGFDNPI FAAIELDYSE ADQDPTGQAA
0201: SEAQKHLTFY ELDLGLNHVS RKWSNPVDNG ANMLVTVPGG ADGPSGVLVC AENFVIYMNQ GHPDVRAVIP RRTDLPAERG VLVVSAAVHK QKTMFFFLIQ
0301: TEYGDVFKVT LDHNGDHVSE LKVKYFDTIP VASSICVLKL GFLFSASEFG NHGLYQFQAI GEEPDVESSS SNLMETEEGF QPVFFQPRRL KNLVRIDQVE
0401: SLMPLMDMKV LNIFEEETPQ IFSLCGRGPR SSLRILRPGL AITEMAVSQL PGQPSAVWTV KKNVSDEFDA YIVVSFTNAT LVLSIGEQVE EVNDSGFLDT
0501: TPSLAVSLIG DDSLMQVHPN GIRHIREDGR INEWRTPGKR SIVKVGYNRL QVVIALSGGE LIYFEADMTG QLMEVEKHEM SGDVACLDIA PVPEGRKRSR
0601: FLAVGSYDNT VRILSLDPDD CLQILSVQSV SSAPESLLFL EVQASIGGDD GADHPANLFL NSGLQNGVLF RTVVDMVTGQ LSDSRSRFLG LKPPKLFSIS
0701: VRGRSAMLCL SSRPWLGYIH RGHFHLTPLS YETLEFAAPF SSDQCAEGVV SVAGDALRIF MIDRLGETFN ETVVPLRYTP RKFVLHPKRK LLVIIESDQG
0801: AFTAEEREAA RKECFEAGGV GENGNGNADQ MENGADDEDK EDPLSDEQYG YPKAESEKWV SCIRVLDPKT ATTTCLLELQ DNEAAYSVCT VNFHDKEYGT
0901: LLAVGTVKGM QFWPKKNLVA GFIHIYRFVE DGKSLELLHK TQVEGVPLAL CQFQGRLLAG IGPVLRLYDL GKKRLLRKCE NKLFPNTIIS IQTYRDRIYV
1001: GDIQESFHYC KYRRDENQLY IFADDCVPRW LTASHHVDFD TMAGADKFGN VYFVRLPQDL SEEIEEDPTG GKIKWEQGKL NGAPNKVDEI VQFHVGDVVT
1101: CLQKASMIPG GSESIMYGTV MGSIGALHAF TSRDDVDFFS HLEMHMRQEY PPLCGRDHMA YRSAYFPVKD VIDGDLCEQF PTLPMDLQRK IADELDRTPA
1201: EILKKLEDAR NKII
Arabidopsis Description
SAP130ASpliceosome-associated protein 130 B [Source:UniProtKB/Swiss-Prot;Acc:P0DKL6]
SUBAcon: [vacuole,nucleus]
SUBAcon: [vacuole,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.