CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 2
mitochondrion 3
cytosol 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
nucleus: 27291164
endoplasmic reticulum: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG92964	Soybean	nucleus	97.94	97.94
VIT_00s0317g00100.t01	Wine grape	endoplasmic reticulum	91.35	91.35
PGSC0003DMT400077607	Potato	nucleus	88.47	88.69
CDY36309	Canola	cytosol, nucleus, plastid	85.83	88.23
CDY36325	Canola	nucleus, plastid, vacuole	85.91	87.87
Solyc04g010260.2.1	Tomato	nucleus	85.01	87.83
AT3G55200.1	Thale cress	nucleus, vacuole	87.64	87.64
AT3G55220.1	Thale cress	nucleus, vacuole	87.64	87.64
Bra034172.1-P	Field mustard	nucleus, plastid, vacuole	87.56	87.56
GSMUA_Achr9P30340_001	Banana	cytosol	49.42	85.71
GSMUA_Achr6P19780_001	Banana	cytosol	65.73	81.68
Os02t0137400-01	Rice	nucleus	57.41	81.24
EES04483	Sorghum	mitochondrion	81.71	80.52
TraesCS6B01G135400.1	Wheat	unclear	81.22	80.36
TraesCS6A01G107200.1	Wheat	nucleus	81.22	80.36
TraesCS6D01G095000.1	Wheat	mitochondrion	81.14	80.28
HORVU6Hr1G019130.1	Barley	mitochondrion	80.81	79.95
Zm00001d015208_P003	Maize	extracellular, plasma membrane	80.81	79.82
VIT_15s0107g00230.t01	Wine grape	nucleus	8.4	78.46
VIT_15s0107g00220.t01	Wine grape	cytosol	7.91	66.21
KRH25071	Soybean	nucleus	11.37	23.12
KRH59213	Soybean	cytosol, plasma membrane, plastid	9.31	22.6
KRH59212	Soybean	cytosol, nucleus	9.56	21.76
KRH43086	Soybean	nucleus	3.62	21.67
KRH68075	Soybean	nucleus, plastid	18.29	16.01
KRG96340	Soybean	nucleus, plastid	18.2	15.93

Protein Annotations

EntrezGene:100775785	MapMan:16.4.1.2.4.3	Gene3D:2.130.10.10	EMBL:ACUP02006721	InterPro:Cleavage/polyA-sp_fac_asu_C	EnsemblPlantsGene:GLYMA_10G291300
GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	UniProt:I1LFD7	InterPro:IPR015943	EnsemblPlants:KRH36214	ProteinID:KRH36214
ProteinID:KRH36214.1	PFAM:PF03178	PFAM:PF10433	PANTHER:PTHR10644	PANTHER:PTHR10644:SF1	SUPFAM:SSF50978
UniParc:UPI000233D691	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr10:+:50927153..50932700

Molecular Weight (calculated)

134968.0 Da

IEP (calculated)

5.231

GRAVY (calculated)

-0.162

Length

1214 amino acids

Sequence
(BLAST)

0001: MYLYSLTLQR PTGIICAING NFSGGKSQEI VVARGKVLDL LRPDDNGRIQ TILSVEIFGA IRSLAQFRLM GAQKDYIVVG SDSGRIIILE YNKEKNVFDK
0101: IHQETFGKSG CRRIVPGQYL AIDPKGRAVM IGACEKQKLV YVLNRDTAAR LTISSPLEAH KSHTLVYSIC GVDCGFENPI FAAIELDYSE ADQDSTGQAA
0201: SEAQKHLTFY ELDLGLNHVS RKWSEQVDNG ANLLVTVPGG GDGPSGVLVC AENFVIYKNQ GHPEVRAVIP RRADLPAERG VLIVSAAMHK LKNMFFFLLQ
0301: TEYGDIFKVT LEHNNDRVSE LKIKYFDTIP VTASMCVLKS GFLFAASEFG NHALYQFKSI GDDDDVEASS ATLMETEEGF QPVFFQPRRL KNLVRIDQVE
0401: SLMPIMDMKV SNLFEEETPQ IYTLCGRGPR SSLRILRTGL AVSEMAVSKL PGIPSAVWTV KKNVIDEFDA YIVVSFTNAT LVLSIGETVE EVSDSGFLDT
0501: TPSLAVSLIG DDSLMQVHPN GIRHIREDGR INEWRTPGKR SISKVGSNTL QVVIALSGGE LIYFEMDVTG QLMEVEKHEM SGDVACLDIA PVPEGRQRSR
0601: FLAVGSYDKT IRILSLDPDD CMQALSVQSV SSAPESLLFL EVQASVGGED GADHPASLFL NAGLQNGVMF RTVVDMVTGQ LSDSRSRFLG LRAPKLFPII
0701: VRGKRAMLCL SSRPWLGYIH QGHFLLTPLS YETLEYAASF SSDQCVEGVV AVAGEALRIF TIERLGETFN ETVIPLRYTP RKFVLQPKRK LLVMIESDQG
0801: ALTAEEREAA RKECFEAAQA GENGTGSADQ MENGGDDEDK DDPLSDEHYG YPKAESDKWA SCIRVLDPRT SNTTCLLELQ ENEAAFSICT VNFHDKEYGT
0901: LLAVGTAKGL QFLPKRTVTA GFIHIYRFVE DGRSLELLHK TQVEGVPLAL CQFQGRLLAG IGPVLRLYDL GKKRLLRKCE NKLFPNTIIS IHAYRDRIYV
1001: GDVQESFHYC KYRRDENQLY IFADDCVPRW LTASYHIDFD TMAGTDKFGN IYFVRLPQDV SDEIEEDPTG GRIKWEQGKL NGAPNKVEEI VQFHVGDVVT
1101: CLQKASLIPG GGECIVFGTV MGSVGALHAF TSRDDVDFFS HLEMHMRQDH PPLCGRDHMA YRSAYFPVKD VIDGDLCEQY PTLPMDLQRK IADELDRTPG
1201: EILKKLEEVR NKII

Best Arabidopsis Sequence Match ( AT3G55200.2 )
(BLAST)

0001: MYLYSLTLQQ ATGIVCAING NFSGGKTQEI AVARGKILDL LRPDENGKIQ TIHSVEVFGA IRSLAQFRLT GAQKDYIVVG SDSGRIVILE YNKEKNVFDK
0101: VHQETFGKSG CRRIVPGQYV AVDPKGRAVM IGACEKQKLV YVLNRDTTAR LTISSPLEAH KSHTICYSLC GVDCGFDNPI FAAIELDYSE ADQDPTGQAA
0201: SEAQKHLTFY ELDLGLNHVS RKWSNPVDNG ANMLVTVPGG ADGPSGVLVC AENFVIYMNQ GHPDVRAVIP RRTDLPAERG VLVVSAAVHK QKTMFFFLIQ
0301: TEYGDVFKVT LDHNGDHVSE LKVKYFDTIP VASSICVLKL GFLFSASEFG NHGLYQFQAI GEEPDVESSS SNLMETEEGF QPVFFQPRRL KNLVRIDQVE
0401: SLMPLMDMKV LNIFEEETPQ IFSLCGRGPR SSLRILRPGL AITEMAVSQL PGQPSAVWTV KKNVSDEFDA YIVVSFTNAT LVLSIGEQVE EVNDSGFLDT
0501: TPSLAVSLIG DDSLMQVHPN GIRHIREDGR INEWRTPGKR SIVKVGYNRL QVVIALSGGE LIYFEADMTG QLMEVEKHEM SGDVACLDIA PVPEGRKRSR
0601: FLAVGSYDNT VRILSLDPDD CLQILSVQSV SSAPESLLFL EVQASIGGDD GADHPANLFL NSGLQNGVLF RTVVDMVTGQ LSDSRSRFLG LKPPKLFSIS
0701: VRGRSAMLCL SSRPWLGYIH RGHFHLTPLS YETLEFAAPF SSDQCAEGVV SVAGDALRIF MIDRLGETFN ETVVPLRYTP RKFVLHPKRK LLVIIESDQG
0801: AFTAEEREAA RKECFEAGGV GENGNGNADQ MENGADDEDK EDPLSDEQYG YPKAESEKWV SCIRVLDPKT ATTTCLLELQ DNEAAYSVCT VNFHDKEYGT
0901: LLAVGTVKGM QFWPKKNLVA GFIHIYRFVE DGKSLELLHK TQVEGVPLAL CQFQGRLLAG IGPVLRLYDL GKKRLLRKCE NKLFPNTIIS IQTYRDRIYV
1001: GDIQESFHYC KYRRDENQLY IFADDCVPRW LTASHHVDFD TMAGADKFGN VYFVRLPQDL SEEIEEDPTG GKIKWEQGKL NGAPNKVDEI VQFHVGDVVT
1101: CLQKASMIPG GSESIMYGTV MGSIGALHAF TSRDDVDFFS HLEMHMRQEY PPLCGRDHMA YRSAYFPVKD VIDGDLCEQF PTLPMDLQRK IADELDRTPA
1201: EILKKLEDAR NKII

Arabidopsis Description

SAP130ASpliceosome-associated protein 130 B [Source:UniProtKB/Swiss-Prot;Acc:P0DKL6]
SUBAcon: [vacuole,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.