Factsheet for Os02t0137400-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
YLoc:	cytosol

nucleus: 19621931
nucleus: 23303719
nucleus: 23777608
nucleus: 26035336

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 23303719 doi

Q He, L Chen, Y Xu, W Yu

State Key Laboratory for Agrobiotechnology, Institute of Plant Molecular Biology and Agricultural Biotechnology, School of Life Sciences, The Chinese University of Hong Kong, Shatin, Hong Kong.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P30340_001	Banana	cytosol	67.95	83.29
VIT_15s0107g00230.t01	Wine grape	nucleus	10.61	70.0
HORVU6Hr1G019130.1	Barley	mitochondrion	94.29	65.93
EES04483	Sorghum	mitochondrion	94.06	65.5
Zm00001d015208_P003	Maize	extracellular, plasma membrane	93.82	65.5
TraesCS6D01G095000.1	Wheat	mitochondrion	93.59	65.44
TraesCS6B01G135400.1	Wheat	unclear	93.59	65.44
TraesCS6A01G107200.1	Wheat	nucleus	93.47	65.36
VIT_15s0107g00220.t01	Wine grape	cytosol	10.96	64.83
GSMUA_Achr6P19780_001	Banana	cytosol	68.65	60.29
VIT_00s0317g00100.t01	Wine grape	endoplasmic reticulum	83.33	58.9
CDY36309	Canola	cytosol, nucleus, plastid	79.84	58.0
KRG92964	Soybean	nucleus	81.93	57.91
PGSC0003DMT400077607	Potato	nucleus	81.47	57.72
CDY36325	Canola	nucleus, plastid, vacuole	79.84	57.71
KRH36214	Soybean	nucleus	81.24	57.41
AT3G55220.1	Thale cress	nucleus, vacuole	80.42	56.84
AT3G55200.1	Thale cress	nucleus, vacuole	80.42	56.84
Bra034172.1-P	Field mustard	nucleus, plastid, vacuole	80.07	56.59
Solyc04g010260.2.1	Tomato	nucleus	76.34	55.74
Os07t0203700-01	Rice	cytosol, nucleus	13.05	16.82
Os07t0203800-01	Rice	cytosol, plastid	1.63	4.98

Protein Annotations

MapMan:16.4.1.2.4.3	Gene3D:2.130.10.10	UniProt:A0A0P0VEN2	ProteinID:BAS76879.1	InterPro:Cleavage/polyA-sp_fac_asu_C	ncoils:Coil
GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	InterPro:IPR015943	EnsemblPlantsGene:Os02g0137400	EnsemblPlants:Os02t0137400-01	PFAM:PF03178
PFAM:PF10433	PANTHER:PTHR10644	PANTHER:PTHR10644:SF1	SUPFAM:SSF50978	UniParc:UPI0000DF0533	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat_dom_sf	:	:	:	:	:

Description

Similar to Spliceosomal-like protein. (Os02t0137400-01)

Coordinates

chr2:+:1979693..1983583

Molecular Weight (calculated)

95605.2 Da

IEP (calculated)

4.865

GRAVY (calculated)

-0.240

Length

858 amino acids

Sequence
(BLAST)

001: GRDVDVESSS ATLMETDEGF QPVFFQPRAL KNLYRIDEIE SLMPIMDMRV ANLFDEETPQ VFTACGRGPR STLRILRPGL AISEMARSML PAEPIAVWTV
101: KKNINDMFDA YIVVSFANVT LVLSIGETIE EVSDSQFLDT THSLAVSLLG EDSLMQVHPN GIRHIREDGR VNEWRTPGKK TITKVGSNRL QVVIALSGGE
201: LIYFEMDMTG QLMEVEKQDM SGDVACLAIA PVPEGRQRSR FLAVGSFDNT IRILSVDPDD CLQPLSVQSV SSAPESLMFL EVQASVGGED GADHPANLFL
301: NAGLQNGVLF RTNVDMVTGQ LSDTRSRFLG LRPPKLFPCI VSHRQAMLCL SSRPWLGYIH QGHFLLTPLS CDTLESAASF SSDQCSEGVV AVAGDALRIF
401: TIEHLGETFN ETAIPLRYTP RKFVILPKKK YLAVIESDKG ALSAEEREAA KKECLEAAGV TENGNANNGD QMENGDGQED GAEDRNTLPD EQYGYPKAES
501: ERWVSCIRIL DPKSRDTTCL LELQDNEAAV SICTVNFHDK EHGTLLAVGT AKGLQFWPKR NLSAGFIHIY KFVDEGRSLE LLHKTQVEEV PLALCQFQGR
601: LLAGVGSVLR LYDLGKRKLL RKCENKLFPR TIVSIHTYRD RIYVGDMQES FHYCKYRRDE NQLYIFADDS VPRWLTAANH IDFDTMAGAD KFGNIYFARL
701: PQDLSDEIEE DPTGGKIKWE QGKLNGAPNK VEEIVQFHVG DVVTCLQKAS LIPGGGECLI YGTVMGSVGA LLAFTSREDV DFFSHLEMHL RQEHPPLCGR
801: DHMAYRSAYF PVKDVIDGDL CEQFPSLPAD MQRKIADELD RTPGEILKKL EDIRNKII

Best Arabidopsis Sequence Match ( AT3G55200.2 )
(BLAST)

0001: MYLYSLTLQQ ATGIVCAING NFSGGKTQEI AVARGKILDL LRPDENGKIQ TIHSVEVFGA IRSLAQFRLT GAQKDYIVVG SDSGRIVILE YNKEKNVFDK
0101: VHQETFGKSG CRRIVPGQYV AVDPKGRAVM IGACEKQKLV YVLNRDTTAR LTISSPLEAH KSHTICYSLC GVDCGFDNPI FAAIELDYSE ADQDPTGQAA
0201: SEAQKHLTFY ELDLGLNHVS RKWSNPVDNG ANMLVTVPGG ADGPSGVLVC AENFVIYMNQ GHPDVRAVIP RRTDLPAERG VLVVSAAVHK QKTMFFFLIQ
0301: TEYGDVFKVT LDHNGDHVSE LKVKYFDTIP VASSICVLKL GFLFSASEFG NHGLYQFQAI GEEPDVESSS SNLMETEEGF QPVFFQPRRL KNLVRIDQVE
0401: SLMPLMDMKV LNIFEEETPQ IFSLCGRGPR SSLRILRPGL AITEMAVSQL PGQPSAVWTV KKNVSDEFDA YIVVSFTNAT LVLSIGEQVE EVNDSGFLDT
0501: TPSLAVSLIG DDSLMQVHPN GIRHIREDGR INEWRTPGKR SIVKVGYNRL QVVIALSGGE LIYFEADMTG QLMEVEKHEM SGDVACLDIA PVPEGRKRSR
0601: FLAVGSYDNT VRILSLDPDD CLQILSVQSV SSAPESLLFL EVQASIGGDD GADHPANLFL NSGLQNGVLF RTVVDMVTGQ LSDSRSRFLG LKPPKLFSIS
0701: VRGRSAMLCL SSRPWLGYIH RGHFHLTPLS YETLEFAAPF SSDQCAEGVV SVAGDALRIF MIDRLGETFN ETVVPLRYTP RKFVLHPKRK LLVIIESDQG
0801: AFTAEEREAA RKECFEAGGV GENGNGNADQ MENGADDEDK EDPLSDEQYG YPKAESEKWV SCIRVLDPKT ATTTCLLELQ DNEAAYSVCT VNFHDKEYGT
0901: LLAVGTVKGM QFWPKKNLVA GFIHIYRFVE DGKSLELLHK TQVEGVPLAL CQFQGRLLAG IGPVLRLYDL GKKRLLRKCE NKLFPNTIIS IQTYRDRIYV
1001: GDIQESFHYC KYRRDENQLY IFADDCVPRW LTASHHVDFD TMAGADKFGN VYFVRLPQDL SEEIEEDPTG GKIKWEQGKL NGAPNKVDEI VQFHVGDVVT
1101: CLQKASMIPG GSESIMYGTV MGSIGALHAF TSRDDVDFFS HLEMHMRQEY PPLCGRDHMA YRSAYFPVKD VIDGDLCEQF PTLPMDLQRK IADELDRTPA
1201: EILKKLEDAR NKII

Arabidopsis Description

SAP130ASpliceosome-associated protein 130 B [Source:UniProtKB/Swiss-Prot;Acc:P0DKL6]
SUBAcon: [vacuole,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.