CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
nucleus 2
mitochondrion 5
vacuole 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d015208_P003	Maize	extracellular, plasma membrane	97.81	98.05
TraesCS6D01G095000.1	Wheat	mitochondrion	94.56	94.95
TraesCS6B01G135400.1	Wheat	unclear	94.56	94.95
TraesCS6A01G107200.1	Wheat	nucleus	94.4	94.78
HORVU6Hr1G019130.1	Barley	mitochondrion	94.16	94.54
Os02t0137400-01	Rice	nucleus	65.5	94.06
GSMUA_Achr9P30340_001	Banana	cytosol	47.56	83.71
VIT_00s0317g00100.t01	Wine grape	endoplasmic reticulum	80.93	82.13
KRH36214	Soybean	nucleus	80.52	81.71
PGSC0003DMT400077607	Potato	nucleus	80.03	81.42
KRG92964	Soybean	nucleus	80.03	81.22
Solyc04g010260.2.1	Tomato	nucleus	77.11	80.85
CDY36309	Canola	cytosol, nucleus, plastid	77.19	80.53
CDY36325	Canola	nucleus, plastid, vacuole	77.35	80.29
AT3G55220.1	Thale cress	nucleus, vacuole	78.81	79.98
AT3G55200.1	Thale cress	nucleus, vacuole	78.81	79.98
Bra034172.1-P	Field mustard	nucleus, plastid, vacuole	78.49	79.65
GSMUA_Achr6P19780_001	Banana	cytosol	62.99	79.43
VIT_15s0107g00230.t01	Wine grape	nucleus	7.14	67.69
VIT_15s0107g00220.t01	Wine grape	cytosol	7.22	61.38
KXG22678	Sorghum	nucleus	19.48	22.04
KXG34639	Sorghum	plastid	16.8	15.21

Protein Annotations

MapMan:16.4.1.2.4.3	Gene3D:2.130.10.10	EntrezGene:8057539	UniProt:C5XTZ1	InterPro:Cleavage/polyA-sp_fac_asu_C	EnsemblPlants:EES04483
ProteinID:EES04483	ProteinID:EES04483.1	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:IPR015943	PFAM:PF03178
PFAM:PF10433	PANTHER:PTHR10644	PANTHER:PTHR10644:SF1	EnsemblPlantsGene:SORBI_3004G034700	SUPFAM:SSF50978	SUPFAM:SSF63829
unigene:Sbi.20753	UniParc:UPI0001A853F9	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat_dom_sf	RefSeq:XP_002451507.1	SEG:seg

Description

hypothetical protein

Coordinates

chr4:+:2792058..2797309

Molecular Weight (calculated)

136173.0 Da

IEP (calculated)

5.157

GRAVY (calculated)

-0.184

Length

1232 amino acids

Sequence
(BLAST)

0001: MYLYSLTLQR ATGAVCAVIG SFSGRDSKKS AASGSGSGST QEIAVARGST LDLLRPDPET GRLRTLLSVD VFGAIRSLAQ FRLTGANKDY LVVGSDSGRL
0101: VILEYSPDRN RLDKVHQETF GKSGCRRIVP GQLLAVDPKG RALCIAALEK QKLVYVLNRD AAARLTISSP LEAHKSNTLT FALAALDCGF DNPVFAAIEL
0201: EYAESDRDPT GQAANQAQKL LTFYELDLGL NHVSRKVSEP IDNGANLLVT VPGGGDGPSG VLVCCDNFVL YRNQGHPEIR AVIPRRADLP AERGVLIVAA
0301: ATHKQKSMFF FLLQTEYGDI FKVDLDHNGD TVSELRIKYF DTIPVTSAVC VLRSGFLFAA SEFGNHALYQ FRDIGRDADV ESSSATLMET EEGFQPVFFQ
0401: PRALKNLMRI DEIESLMPVM DMRVANLFDE ETPQLFTACG RGPRSTLRIL RPGLAISEMA RSMLPAEPIA VWTVKKNIND MFDAYIVVSF TNVTLVLSIG
0501: ETIEEVSDSQ FLDTTHSLAV TLLGEDSLMQ VHPNGIRHIR EDGRVNEWRT PGKKTITKVG SNRLQVVIAL SGGELIYFEM DMTGQLMEVE KQDMSGDVAC
0601: LAIAPVPEGR QRSRFLAVGS YDNTIRILSL DPDDCLQPLS VQSVSSAPES LLFLEVQASI GGEDGADYPA NLFLNAGLQN GVLFRTNVDM VTGQLSDTRS
0701: RFLGLRPPKL FPCVVSHRQA MLCLSSRPWL GYIHQGHFLL TPLSCDTLES ASSFSSDQCS EGVVAVAGDA LRIFTIERLG ETFNETAIPL RYTPRKFVIL
0801: PKKKYIAVIE SDKGAFSAEE REAAKKECLE ASGAAENGNA NNGDPMENGD GQEDGAEEGN TFPDEQYGYP KAESERWVSC IRILDPRSRD TTCLLELQEN
0901: EAAVSICTVN FHDKEHGTLL AVGTAKGLQF WPRRTLAGGF IHIYKFVDEG RSLELLHKTQ VEEVPLALCQ FQGRLLAGVG SVLRLYDLGK RKLLRKCENK
1001: LFPRTIVSIH TYRDRIYVGD MQESFHYCKY RRDENQLYIF ADDSVPRWLT AAQHIDFDTM AGADKFGNIY FARLPQDISD EIEEDPTGGK IKWEQGKLNG
1101: APNKVEEIVQ FHVGDVVTCL QKASLIPGGG ECLIYGTVMG SVGALLAFTS REDVDFFSHL EMHLRQEHPP LCGRDHMAYR SAYFPVKDVI DGDLCEQYPS
1201: LPADMQRKIA DELDRTPGEI LKKLEDIRNK II

Best Arabidopsis Sequence Match ( AT3G55200.2 )
(BLAST)

0001: MYLYSLTLQQ ATGIVCAING NFSGGKTQEI AVARGKILDL LRPDENGKIQ TIHSVEVFGA IRSLAQFRLT GAQKDYIVVG SDSGRIVILE YNKEKNVFDK
0101: VHQETFGKSG CRRIVPGQYV AVDPKGRAVM IGACEKQKLV YVLNRDTTAR LTISSPLEAH KSHTICYSLC GVDCGFDNPI FAAIELDYSE ADQDPTGQAA
0201: SEAQKHLTFY ELDLGLNHVS RKWSNPVDNG ANMLVTVPGG ADGPSGVLVC AENFVIYMNQ GHPDVRAVIP RRTDLPAERG VLVVSAAVHK QKTMFFFLIQ
0301: TEYGDVFKVT LDHNGDHVSE LKVKYFDTIP VASSICVLKL GFLFSASEFG NHGLYQFQAI GEEPDVESSS SNLMETEEGF QPVFFQPRRL KNLVRIDQVE
0401: SLMPLMDMKV LNIFEEETPQ IFSLCGRGPR SSLRILRPGL AITEMAVSQL PGQPSAVWTV KKNVSDEFDA YIVVSFTNAT LVLSIGEQVE EVNDSGFLDT
0501: TPSLAVSLIG DDSLMQVHPN GIRHIREDGR INEWRTPGKR SIVKVGYNRL QVVIALSGGE LIYFEADMTG QLMEVEKHEM SGDVACLDIA PVPEGRKRSR
0601: FLAVGSYDNT VRILSLDPDD CLQILSVQSV SSAPESLLFL EVQASIGGDD GADHPANLFL NSGLQNGVLF RTVVDMVTGQ LSDSRSRFLG LKPPKLFSIS
0701: VRGRSAMLCL SSRPWLGYIH RGHFHLTPLS YETLEFAAPF SSDQCAEGVV SVAGDALRIF MIDRLGETFN ETVVPLRYTP RKFVLHPKRK LLVIIESDQG
0801: AFTAEEREAA RKECFEAGGV GENGNGNADQ MENGADDEDK EDPLSDEQYG YPKAESEKWV SCIRVLDPKT ATTTCLLELQ DNEAAYSVCT VNFHDKEYGT
0901: LLAVGTVKGM QFWPKKNLVA GFIHIYRFVE DGKSLELLHK TQVEGVPLAL CQFQGRLLAG IGPVLRLYDL GKKRLLRKCE NKLFPNTIIS IQTYRDRIYV
1001: GDIQESFHYC KYRRDENQLY IFADDCVPRW LTASHHVDFD TMAGADKFGN VYFVRLPQDL SEEIEEDPTG GKIKWEQGKL NGAPNKVDEI VQFHVGDVVT
1101: CLQKASMIPG GSESIMYGTV MGSIGALHAF TSRDDVDFFS HLEMHMRQEY PPLCGRDHMA YRSAYFPVKD VIDGDLCEQF PTLPMDLQRK IADELDRTPA
1201: EILKKLEDAR NKII

Arabidopsis Description

SAP130ASpliceosome-associated protein 130 B [Source:UniProtKB/Swiss-Prot;Acc:P0DKL6]
SUBAcon: [vacuole,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.