Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- nucleus 1
- plasma membrane 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d019115_P048 | Maize | plastid | 91.92 | 92.26 |
| Os07t0203700-01 | Rice | cytosol, nucleus | 36.74 | 75.08 |
| TraesCS2B01G258400.1 | Wheat | cytosol, nucleus | 62.09 | 69.89 |
| TraesCS2A01G243300.3 | Wheat | plastid | 68.63 | 68.63 |
| TraesCS2D01G245600.6 | Wheat | plastid | 68.55 | 68.55 |
| HORVU2Hr1G055870.14 | Barley | plastid | 67.74 | 67.79 |
| GSMUA_Achr9P11080_001 | Banana | nucleus, plasma membrane, plastid | 55.69 | 56.15 |
| Os07t0203800-01 | Rice | cytosol, plastid | 10.87 | 52.67 |
| VIT_08s0007g07150.t01 | Wine grape | cytosol, nucleus, plasma membrane | 50.33 | 50.26 |
| KRH68075 | Soybean | nucleus, plastid | 49.16 | 48.23 |
| CDY01074 | Canola | nucleus | 47.61 | 47.68 |
| CDY08477 | Canola | nucleus | 47.39 | 47.43 |
| CDY00750 | Canola | nucleus | 46.66 | 47.42 |
| KRG96340 | Soybean | nucleus, plastid | 48.13 | 47.22 |
| CDX73841 | Canola | nucleus, plastid | 46.44 | 47.13 |
| Bra001431.1-P | Field mustard | nucleus, plastid | 46.44 | 47.13 |
| AT3G11960.3 | Thale cress | nucleus | 47.54 | 46.92 |
| Solyc10g080630.1.1 | Tomato | nucleus | 47.54 | 46.45 |
| Bra034797.1-P | Field mustard | nucleus | 47.76 | 44.77 |
| KXG22678 | Sorghum | nucleus | 15.65 | 19.56 |
| EES04483 | Sorghum | mitochondrion | 15.21 | 16.8 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:35.1 | UniProt:A0A1B6Q9P7 | InterPro:Cleavage/polyA-sp_fac_asu_C | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| InterPro:IPR015943 | EnsemblPlants:KXG34639 | ProteinID:KXG34639 | ProteinID:KXG34639.1 | PFAM:PF03178 | PFAM:PF10433 |
| PANTHER:PTHR10644 | PANTHER:PTHR10644:SF6 | EnsemblPlantsGene:SORBI_3002G071500 | UniParc:UPI00081AD078 | InterPro:WD40/YVTN_repeat-like_dom_sf | SEG:seg |
Description
hypothetical protein
Coordinates
chr2:-:7224482..7240932
Molecular Weight (calculated)
149201.0 Da
IEP (calculated)
5.690
GRAVY (calculated)
0.038
Length
1361 amino acids
Sequence
(BLAST)
(BLAST)
0001: MKPSSTAGDA ASASTAEAAA AASSSSSGPS TSASTSTADA THYIAKRVLR GSAVLHVAEG CFRSPDSADV VLAKETSLEL VAVGDDGVLQ SICEQDMFGI
0101: IKDIGVLQWH SRHVGLIPQI EHKDLLVVLS DSGKLSLLYF CSEMHRFFAI ANIELSKPGN LRHHLGRILA IDRESNFVAV SSYEDKFALI HVSVSQSGSG
0201: RGIISEKKYF YPPENEEDSR IISSSRTSIR GTIWTMRFIS IPQDEEYYPV LAMIINRKGS DVNDLSLFGY DTSSCVVDHI SSYSEIGPLA LDISEIPEMF
0301: GFALLLRVGD ALLLDLRNPR NVCCIRRISL TTSLIGERIT VEDSCPGLDV DDDVAACALL ELRDSANNIM KDDGYMDIDG VDSRGNVKPR IICSWSWEPP
0401: EPVRRGWARL LFCLDDGEFH ILEFTLDVEG VKLYTFEYID RSLPCRPLFW MKNRMIIGFV EMGDGMIFKL GDRRLFHKST IQNVAPILDL AIADYHGEKQ
0501: DQMFACCGMS PEGSLRVLRN GVNVDRLLKT EAIYQGVTGL WTLRMKTTDA YHSFLVLSFV EETRILSVGL SFNDISDAVG FQPDVCTLAC GLVADGLLVQ
0601: IYSKGVKVCL PTVYAHPEGA PLTSPICTDW YPAITISVGA VGHNIVVVAT SNPCCLYVLG VRSSTSYRYE LYATHHVQLQ YEVSCISIPQ EDWRHDNVAL
0701: SCGEGDDICN NSPPKANVRK FAVIGTHRPS VELISLEPGE ALRVLTIGTI SVNNAFGAPM SGCIPENVRF VAAERFYILA GLRNGMLLRF ESEASDYLPG
0801: FFYKDSSIPS INTFLQLISI RRIGITPVLL VPIHDSANAD IIVLSDRPWL LHAARHSLAY SSISFLSASH VTPVSSVDCP NGLLFVAESC LHLVELVHGK
0901: RLNAQKFSIG GTPRKVLYHN ESRTLLVLRT GLSGASSSSD IVQVDPQNGV LLSRYKCEPG ETAKCMQIAK IGNDQVLIVG TNKSAGRPMM SNGEAESSIK
1001: GRLIVLSLEA VESPRESSSF IPASSFNPSS SHSGSPFHEI VGYTTEEFSS NSLCSSPDEF CCNQIQAEMA GQLRSLTHAI LNGAVLAVCP YLDRYVLAAA
1101: GNTIYVFGFT NENPHRMKKC AVGRTRFTIT CLKTFASRIA VGDCRDGVLF YSYNESHRKL ELIYSDPAHR LVGDIALLNC ETAVVSDRRG SISVLSCTRL
1201: EVSESPQKNL AVNCSFYMGE TAMSIQKAAF RYRLPFDDDT DPVLETVYDC IVASTMLGSL FVMIPLTSEE HQLLQDVQER LSVHPLTAPV LGNDHAEFRQ
1301: RGTPSVAPPI LDGDMLVQFL ELTGEQQQAI LAHTLPGKGP QKSLSVFEVL RTLERVHYAL N
0101: IKDIGVLQWH SRHVGLIPQI EHKDLLVVLS DSGKLSLLYF CSEMHRFFAI ANIELSKPGN LRHHLGRILA IDRESNFVAV SSYEDKFALI HVSVSQSGSG
0201: RGIISEKKYF YPPENEEDSR IISSSRTSIR GTIWTMRFIS IPQDEEYYPV LAMIINRKGS DVNDLSLFGY DTSSCVVDHI SSYSEIGPLA LDISEIPEMF
0301: GFALLLRVGD ALLLDLRNPR NVCCIRRISL TTSLIGERIT VEDSCPGLDV DDDVAACALL ELRDSANNIM KDDGYMDIDG VDSRGNVKPR IICSWSWEPP
0401: EPVRRGWARL LFCLDDGEFH ILEFTLDVEG VKLYTFEYID RSLPCRPLFW MKNRMIIGFV EMGDGMIFKL GDRRLFHKST IQNVAPILDL AIADYHGEKQ
0501: DQMFACCGMS PEGSLRVLRN GVNVDRLLKT EAIYQGVTGL WTLRMKTTDA YHSFLVLSFV EETRILSVGL SFNDISDAVG FQPDVCTLAC GLVADGLLVQ
0601: IYSKGVKVCL PTVYAHPEGA PLTSPICTDW YPAITISVGA VGHNIVVVAT SNPCCLYVLG VRSSTSYRYE LYATHHVQLQ YEVSCISIPQ EDWRHDNVAL
0701: SCGEGDDICN NSPPKANVRK FAVIGTHRPS VELISLEPGE ALRVLTIGTI SVNNAFGAPM SGCIPENVRF VAAERFYILA GLRNGMLLRF ESEASDYLPG
0801: FFYKDSSIPS INTFLQLISI RRIGITPVLL VPIHDSANAD IIVLSDRPWL LHAARHSLAY SSISFLSASH VTPVSSVDCP NGLLFVAESC LHLVELVHGK
0901: RLNAQKFSIG GTPRKVLYHN ESRTLLVLRT GLSGASSSSD IVQVDPQNGV LLSRYKCEPG ETAKCMQIAK IGNDQVLIVG TNKSAGRPMM SNGEAESSIK
1001: GRLIVLSLEA VESPRESSSF IPASSFNPSS SHSGSPFHEI VGYTTEEFSS NSLCSSPDEF CCNQIQAEMA GQLRSLTHAI LNGAVLAVCP YLDRYVLAAA
1101: GNTIYVFGFT NENPHRMKKC AVGRTRFTIT CLKTFASRIA VGDCRDGVLF YSYNESHRKL ELIYSDPAHR LVGDIALLNC ETAVVSDRRG SISVLSCTRL
1201: EVSESPQKNL AVNCSFYMGE TAMSIQKAAF RYRLPFDDDT DPVLETVYDC IVASTMLGSL FVMIPLTSEE HQLLQDVQER LSVHPLTAPV LGNDHAEFRQ
1301: RGTPSVAPPI LDGDMLVQFL ELTGEQQQAI LAHTLPGKGP QKSLSVFEVL RTLERVHYAL N
0001: MAAPEDESSA QSQSSPATAA PTPPPSSSPS SAGDHYLAKC ILRPSVVLQV AYGYFRSPSS RDIVFGKETC IELVVIGEDG IVESVCEQYV FGTIKDLAVI
0101: PQSSKLYSNS LQMGKDLLAV LSDSGKLSFL SFSNEMHRFS PIQHVQLSTP GNSRIQLGRM LTIDSSGLFL AVSAYHDRFA LFSLSTSSMG DIIHQRISYP
0201: SEDGGNGSSI QAISGTIWSM CFISKDFNES KEYAPILAIV INRKGSLMNE LALFRWNVKE ESICLISEYV ETGALAHSIV EVPHSSGFAF LFRIGDVLLM
0301: DLRDPQNPCC LFRTSLDFVP ASLMEEHFVE ESCRVQDGDD EGCNVVVCAL LELRDHEVRD HDPMFIDTES DIGKLSSKNV SSWTWEPENN HNPRMIICLD
0401: NGDFFMFELI YEDDGVKVNL SECLYKGLPC KDILWIEGGF LATFAEMADG TVFKLGTEKL HWMSSIQNIA PILDFSVMDD QNEKRDQIFA CCGVTPEGSL
0501: RIIRSGINVE KLLKTAPVYQ GITGTWTVKM KLTDVYHSFL VLSFVEETRV LSVGLSFKDV TDSVGFQSDV CTFACGLVAD GLLVQIHQDA IRLCMPTMDA
0601: HSDGIPVSSP FFSSWFPENV SISLGAVGQN LIVVSTSNPC FLSILGVKSV SSQCCEIYEI QRVTLQYEVS CISVPQKHIG KKRSRDSSPD NFCKAAIPSA
0701: MEQGYTFLIG THKPSVEVLS FTEDGVGVRV LASGLVSLTN TMGTVISGCI PQDVRLVLVD QLYVLSGLRN GMLLRFEWAP FSNSSGLNCP DYFSHCKEEM
0801: DTVVGKKDNL PVNLLLIATR RIGITPVFLV PFSDSLDSDI IALSDRPWLL QTARQSLSYT SISFQPSTHA TPVCSFECPQ GILFVSENCL HLVEMVHSKR
0901: RNAQKFQLGG TPRKVIYHSE SKLLIVMRTD LYDTCTSDIC CVDPLSGSVL SSYKLKPGET GKSMELVRVG NEHVLVVGTS LSSGPAILPS GEAESTKGRV
1001: IILCLEHTQN SDSGSMTICS KACSSSQRTS PFHDVVGYTT ENLSSSSLCS SPDDYSYDGI KLDEAETWQL RLASSTTWPG MVLAICPYLD HYFLASAGNA
1101: FYVCGFPNDS PERMKRFAVG RTRFMITSLR TYFTRIVVGD CRDGVLFYSY HEESKKLHQI YCDPAQRLVA DCFLMDANSV AVSDRKGSIA ILSCKDHSDF
1201: GMKHLEYSSP ESNLNLNCAY YMGEIAMSIK KGCNIYKLPA DDVLRSYGLS KSIDTADDTI IAGTLLGSIF VFAPISSEEY ELLEGVQAKL GIHPLTAPVL
1301: GNDHNEFRGR ENPSQARKIL DGDMLAQFLE LTNRQQESVL STPQPSPSTS KASSKQRSFP PLMLHQVVQL LERVHYALH
0101: PQSSKLYSNS LQMGKDLLAV LSDSGKLSFL SFSNEMHRFS PIQHVQLSTP GNSRIQLGRM LTIDSSGLFL AVSAYHDRFA LFSLSTSSMG DIIHQRISYP
0201: SEDGGNGSSI QAISGTIWSM CFISKDFNES KEYAPILAIV INRKGSLMNE LALFRWNVKE ESICLISEYV ETGALAHSIV EVPHSSGFAF LFRIGDVLLM
0301: DLRDPQNPCC LFRTSLDFVP ASLMEEHFVE ESCRVQDGDD EGCNVVVCAL LELRDHEVRD HDPMFIDTES DIGKLSSKNV SSWTWEPENN HNPRMIICLD
0401: NGDFFMFELI YEDDGVKVNL SECLYKGLPC KDILWIEGGF LATFAEMADG TVFKLGTEKL HWMSSIQNIA PILDFSVMDD QNEKRDQIFA CCGVTPEGSL
0501: RIIRSGINVE KLLKTAPVYQ GITGTWTVKM KLTDVYHSFL VLSFVEETRV LSVGLSFKDV TDSVGFQSDV CTFACGLVAD GLLVQIHQDA IRLCMPTMDA
0601: HSDGIPVSSP FFSSWFPENV SISLGAVGQN LIVVSTSNPC FLSILGVKSV SSQCCEIYEI QRVTLQYEVS CISVPQKHIG KKRSRDSSPD NFCKAAIPSA
0701: MEQGYTFLIG THKPSVEVLS FTEDGVGVRV LASGLVSLTN TMGTVISGCI PQDVRLVLVD QLYVLSGLRN GMLLRFEWAP FSNSSGLNCP DYFSHCKEEM
0801: DTVVGKKDNL PVNLLLIATR RIGITPVFLV PFSDSLDSDI IALSDRPWLL QTARQSLSYT SISFQPSTHA TPVCSFECPQ GILFVSENCL HLVEMVHSKR
0901: RNAQKFQLGG TPRKVIYHSE SKLLIVMRTD LYDTCTSDIC CVDPLSGSVL SSYKLKPGET GKSMELVRVG NEHVLVVGTS LSSGPAILPS GEAESTKGRV
1001: IILCLEHTQN SDSGSMTICS KACSSSQRTS PFHDVVGYTT ENLSSSSLCS SPDDYSYDGI KLDEAETWQL RLASSTTWPG MVLAICPYLD HYFLASAGNA
1101: FYVCGFPNDS PERMKRFAVG RTRFMITSLR TYFTRIVVGD CRDGVLFYSY HEESKKLHQI YCDPAQRLVA DCFLMDANSV AVSDRKGSIA ILSCKDHSDF
1201: GMKHLEYSSP ESNLNLNCAY YMGEIAMSIK KGCNIYKLPA DDVLRSYGLS KSIDTADDTI IAGTLLGSIF VFAPISSEEY ELLEGVQAKL GIHPLTAPVL
1301: GNDHNEFRGR ENPSQARKIL DGDMLAQFLE LTNRQQESVL STPQPSPSTS KASSKQRSFP PLMLHQVVQL LERVHYALH
Arabidopsis Description
Cleavage and polyadenylation specificity factor (CPSF) A subunit protein [Source:UniProtKB/TrEMBL;Acc:Q84R20]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.