Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- nucleus 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG34639 | Sorghum | plastid | 92.26 | 91.92 |
| Os07t0203700-01 | Rice | cytosol, nucleus | 36.73 | 74.77 |
| TraesCS2B01G258400.1 | Wheat | cytosol, nucleus | 62.54 | 70.14 |
| TraesCS2A01G243300.3 | Wheat | plastid | 69.17 | 68.92 |
| TraesCS2D01G245600.6 | Wheat | plastid | 68.73 | 68.48 |
| HORVU2Hr1G055870.14 | Barley | plastid | 68.51 | 68.31 |
| GSMUA_Achr9P11080_001 | Banana | nucleus, plasma membrane, plastid | 55.01 | 55.26 |
| Os07t0203800-01 | Rice | cytosol, plastid | 10.69 | 51.6 |
| VIT_08s0007g07150.t01 | Wine grape | cytosol, nucleus, plasma membrane | 50.07 | 49.82 |
| KRH68075 | Soybean | nucleus, plastid | 48.67 | 47.58 |
| CDY00750 | Canola | nucleus | 46.68 | 47.27 |
| CDY01074 | Canola | nucleus | 47.2 | 47.09 |
| CDY08477 | Canola | nucleus | 47.12 | 46.99 |
| Bra001431.1-P | Field mustard | nucleus, plastid | 46.39 | 46.91 |
| CDX73841 | Canola | nucleus, plastid | 46.39 | 46.91 |
| AT3G11960.3 | Thale cress | nucleus | 47.64 | 46.85 |
| KRG96340 | Soybean | nucleus, plastid | 47.64 | 46.58 |
| Solyc10g080630.1.1 | Tomato | nucleus | 47.12 | 45.87 |
| Bra034797.1-P | Field mustard | nucleus | 47.27 | 44.15 |
| Zm00001d039165_P046 | Maize | nucleus | 15.78 | 19.58 |
| Zm00001d009745_P023 | Maize | cytosol, nucleus, plasma membrane, plastid | 15.34 | 18.93 |
| Zm00001d015208_P003 | Maize | extracellular, plasma membrane | 15.41 | 17.01 |
Protein Annotations
| EntrezGene:103632101 | Gene3D:2.130.10.10 | MapMan:35.1 | UniProt:A0A1D6HVM7 | InterPro:Cleavage/polyA-sp_fac_asu_C | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | InterPro:IPR015943 | ProteinID:ONM52267.1 | PFAM:PF03178 | PFAM:PF10433 |
| PANTHER:PTHR10644 | PANTHER:PTHR10644:SF6 | UniParc:UPI0004DE9B0B | InterPro:WD40/YVTN_repeat-like_dom_sf | EnsemblPlantsGene:Zm00001d019115 | EnsemblPlants:Zm00001d019115_P048 |
| EnsemblPlants:Zm00001d019115_T048 | SEG:seg | : | : | : | : |
Description
Cleavage and polyadenylation specificity factor (CPSF) A subunit protein
Coordinates
chr7:-:17576898..17590949
Molecular Weight (calculated)
148531.0 Da
IEP (calculated)
5.625
GRAVY (calculated)
0.052
Length
1356 amino acids
Sequence
(BLAST)
(BLAST)
0001: MKPSTAGDAS AAAAASSSGP STSASTSAST STADATHYIA KRVLRGSAVL HVAEGCFRSP DSADVVLAKE TSLELVAVGD DGVLQSICEQ DIFGIIKDIG
0101: VLQWHSRHNG LIPQIECKDL LVVLSDSGKL SLLYFCSEMH RFFAIANIEL SKPGNLRHHL GRILAIDRES NFVAVSSYED KFALIHVSVS QSGSGSGIIS
0201: EKKYFYPPEN EDDARIITSS RTSIRGTIWT MRFISVPQDE EYYPVLAMII NRKGSDVNDL SLFGYDSSSC VINHLSSYSE IGPLVLDVSE IPETFGFALL
0301: LRVGDALLLD LRNPTNVCCI QRVSLTTNLI GEPITVEDPC PGLDVDDDVA ACALLELRDS GNNIMKDDGY MDIDGVDSRS NVKPRIVCSW SWEPPDPVRR
0401: GCARLLFCLD DGEFHILEFT LDVEGAKLYT FEYIDRTLPC RPLFWMKNRM IIGFVEMGDG MIFKLGHRRL LHKSTIQNVA PILDLAIADY HGEKQDQMFA
0501: CCGMSPEGSL RVLRNGVNVD RLLKTEAIYQ GVTGLWTLRM KATDAYHSFL VLSFVEETRI LSVGLSFNDI SDAVGFQPDV CTLACGLVAD NLLVQIYSKG
0601: VKVCLPTVYA HPEGAPLTSP ICTDWYPAIT ISVGAVGHNI VVVATSNPCC LYVLGVRSSS SYQYELYATH HVQLQYEVSC ISIPQEDCIH DNVSFSCGEG
0701: DDICKNPPPK VNVCKFAVIG THRPSVEIIS LEPGEALRVL TIGTVSVNNA LGAPMSGCIP ENVRFVAAER FYILAGLRNG MLLRFESETR DYLPGFLYKD
0801: SSIPSVNTFL QLISIRRIGI TPVLLVPIHD SANADIIVLS DRPWLLHAAR HSLAYSSISF LSASHVTPVS SVDCPNGLLF VAESCLHLVE LVHGKRLNAQ
0901: KFSIGGTPRK VLYHNESRTL LVLRTGLNGA SSSSDVVQVD PQNGVLLSRY KCEPGETAKC MQIAKIGNDQ VLIVGTTKSA GRPMMSNGEA ESSIKGRLIV
1001: LSLEAVESPR ESSSFIPTFS FNPSSHSGSP FHEIVGYTTE EFSSNSMCSS PDEFSCNQIQ AEQMTGQLRS LTQYILNGAV LALCPYLDRY VLAAAGNMIY
1101: VFGFTNENPH RIKKCAVGRT RFTITCLKTF ASRIAVGDCR DGVLFYSYNE SHRKLELVYS DPAHRLVGDI ALLNCETAVV SDRRGSISVL SCTRLEVSES
1201: PQKNLAVNCS FYMGETAMSI QKAAFRYRLP IDDDTDPVLE TVYNCIVAST MLGSLFVMIP LSSEEHQLLQ DVQEKLSVHP LTAPVLGNDH AEFRQRGTPS
1301: VVPPILDGDM LVQFLELTGE QQQAILTHAL PGKGQHRPLS VFQVLQTLER VHYALN
0101: VLQWHSRHNG LIPQIECKDL LVVLSDSGKL SLLYFCSEMH RFFAIANIEL SKPGNLRHHL GRILAIDRES NFVAVSSYED KFALIHVSVS QSGSGSGIIS
0201: EKKYFYPPEN EDDARIITSS RTSIRGTIWT MRFISVPQDE EYYPVLAMII NRKGSDVNDL SLFGYDSSSC VINHLSSYSE IGPLVLDVSE IPETFGFALL
0301: LRVGDALLLD LRNPTNVCCI QRVSLTTNLI GEPITVEDPC PGLDVDDDVA ACALLELRDS GNNIMKDDGY MDIDGVDSRS NVKPRIVCSW SWEPPDPVRR
0401: GCARLLFCLD DGEFHILEFT LDVEGAKLYT FEYIDRTLPC RPLFWMKNRM IIGFVEMGDG MIFKLGHRRL LHKSTIQNVA PILDLAIADY HGEKQDQMFA
0501: CCGMSPEGSL RVLRNGVNVD RLLKTEAIYQ GVTGLWTLRM KATDAYHSFL VLSFVEETRI LSVGLSFNDI SDAVGFQPDV CTLACGLVAD NLLVQIYSKG
0601: VKVCLPTVYA HPEGAPLTSP ICTDWYPAIT ISVGAVGHNI VVVATSNPCC LYVLGVRSSS SYQYELYATH HVQLQYEVSC ISIPQEDCIH DNVSFSCGEG
0701: DDICKNPPPK VNVCKFAVIG THRPSVEIIS LEPGEALRVL TIGTVSVNNA LGAPMSGCIP ENVRFVAAER FYILAGLRNG MLLRFESETR DYLPGFLYKD
0801: SSIPSVNTFL QLISIRRIGI TPVLLVPIHD SANADIIVLS DRPWLLHAAR HSLAYSSISF LSASHVTPVS SVDCPNGLLF VAESCLHLVE LVHGKRLNAQ
0901: KFSIGGTPRK VLYHNESRTL LVLRTGLNGA SSSSDVVQVD PQNGVLLSRY KCEPGETAKC MQIAKIGNDQ VLIVGTTKSA GRPMMSNGEA ESSIKGRLIV
1001: LSLEAVESPR ESSSFIPTFS FNPSSHSGSP FHEIVGYTTE EFSSNSMCSS PDEFSCNQIQ AEQMTGQLRS LTQYILNGAV LALCPYLDRY VLAAAGNMIY
1101: VFGFTNENPH RIKKCAVGRT RFTITCLKTF ASRIAVGDCR DGVLFYSYNE SHRKLELVYS DPAHRLVGDI ALLNCETAVV SDRRGSISVL SCTRLEVSES
1201: PQKNLAVNCS FYMGETAMSI QKAAFRYRLP IDDDTDPVLE TVYNCIVAST MLGSLFVMIP LSSEEHQLLQ DVQEKLSVHP LTAPVLGNDH AEFRQRGTPS
1301: VVPPILDGDM LVQFLELTGE QQQAILTHAL PGKGQHRPLS VFQVLQTLER VHYALN
0001: MAAPEDESSA QSQSSPATAA PTPPPSSSPS SAGDHYLAKC ILRPSVVLQV AYGYFRSPSS RDIVFGKETC IELVVIGEDG IVESVCEQYV FGTIKDLAVI
0101: PQSSKLYSNS LQMGKDLLAV LSDSGKLSFL SFSNEMHRFS PIQHVQLSTP GNSRIQLGRM LTIDSSGLFL AVSAYHDRFA LFSLSTSSMG DIIHQRISYP
0201: SEDGGNGSSI QAISGTIWSM CFISKDFNES KEYAPILAIV INRKGSLMNE LALFRWNVKE ESICLISEYV ETGALAHSIV EVPHSSGFAF LFRIGDVLLM
0301: DLRDPQNPCC LFRTSLDFVP ASLMEEHFVE ESCRVQDGDD EGCNVVVCAL LELRDHEVRD HDPMFIDTES DIGKLSSKNV SSWTWEPENN HNPRMIICLD
0401: NGDFFMFELI YEDDGVKVNL SECLYKGLPC KDILWIEGGF LATFAEMADG TVFKLGTEKL HWMSSIQNIA PILDFSVMDD QNEKRDQIFA CCGVTPEGSL
0501: RIIRSGINVE KLLKTAPVYQ GITGTWTVKM KLTDVYHSFL VLSFVEETRV LSVGLSFKDV TDSVGFQSDV CTFACGLVAD GLLVQIHQDA IRLCMPTMDA
0601: HSDGIPVSSP FFSSWFPENV SISLGAVGQN LIVVSTSNPC FLSILGVKSV SSQCCEIYEI QRVTLQYEVS CISVPQKHIG KKRSRDSSPD NFCKAAIPSA
0701: MEQGYTFLIG THKPSVEVLS FTEDGVGVRV LASGLVSLTN TMGTVISGCI PQDVRLVLVD QLYVLSGLRN GMLLRFEWAP FSNSSGLNCP DYFSHCKEEM
0801: DTVVGKKDNL PVNLLLIATR RIGITPVFLV PFSDSLDSDI IALSDRPWLL QTARQSLSYT SISFQPSTHA TPVCSFECPQ GILFVSENCL HLVEMVHSKR
0901: RNAQKFQLGG TPRKVIYHSE SKLLIVMRTD LYDTCTSDIC CVDPLSGSVL SSYKLKPGET GKSMELVRVG NEHVLVVGTS LSSGPAILPS GEAESTKGRV
1001: IILCLEHTQN SDSGSMTICS KACSSSQRTS PFHDVVGYTT ENLSSSSLCS SPDDYSYDGI KLDEAETWQL RLASSTTWPG MVLAICPYLD HYFLASAGNA
1101: FYVCGFPNDS PERMKRFAVG RTRFMITSLR TYFTRIVVGD CRDGVLFYSY HEESKKLHQI YCDPAQRLVA DCFLMDANSV AVSDRKGSIA ILSCKDHSDF
1201: GMKHLEYSSP ESNLNLNCAY YMGEIAMSIK KGCNIYKLPA DDVLRSYGLS KSIDTADDTI IAGTLLGSIF VFAPISSEEY ELLEGVQAKL GIHPLTAPVL
1301: GNDHNEFRGR ENPSQARKIL DGDMLAQFLE LTNRQQESVL STPQPSPSTS KASSKQRSFP PLMLHQVVQL LERVHYALH
0101: PQSSKLYSNS LQMGKDLLAV LSDSGKLSFL SFSNEMHRFS PIQHVQLSTP GNSRIQLGRM LTIDSSGLFL AVSAYHDRFA LFSLSTSSMG DIIHQRISYP
0201: SEDGGNGSSI QAISGTIWSM CFISKDFNES KEYAPILAIV INRKGSLMNE LALFRWNVKE ESICLISEYV ETGALAHSIV EVPHSSGFAF LFRIGDVLLM
0301: DLRDPQNPCC LFRTSLDFVP ASLMEEHFVE ESCRVQDGDD EGCNVVVCAL LELRDHEVRD HDPMFIDTES DIGKLSSKNV SSWTWEPENN HNPRMIICLD
0401: NGDFFMFELI YEDDGVKVNL SECLYKGLPC KDILWIEGGF LATFAEMADG TVFKLGTEKL HWMSSIQNIA PILDFSVMDD QNEKRDQIFA CCGVTPEGSL
0501: RIIRSGINVE KLLKTAPVYQ GITGTWTVKM KLTDVYHSFL VLSFVEETRV LSVGLSFKDV TDSVGFQSDV CTFACGLVAD GLLVQIHQDA IRLCMPTMDA
0601: HSDGIPVSSP FFSSWFPENV SISLGAVGQN LIVVSTSNPC FLSILGVKSV SSQCCEIYEI QRVTLQYEVS CISVPQKHIG KKRSRDSSPD NFCKAAIPSA
0701: MEQGYTFLIG THKPSVEVLS FTEDGVGVRV LASGLVSLTN TMGTVISGCI PQDVRLVLVD QLYVLSGLRN GMLLRFEWAP FSNSSGLNCP DYFSHCKEEM
0801: DTVVGKKDNL PVNLLLIATR RIGITPVFLV PFSDSLDSDI IALSDRPWLL QTARQSLSYT SISFQPSTHA TPVCSFECPQ GILFVSENCL HLVEMVHSKR
0901: RNAQKFQLGG TPRKVIYHSE SKLLIVMRTD LYDTCTSDIC CVDPLSGSVL SSYKLKPGET GKSMELVRVG NEHVLVVGTS LSSGPAILPS GEAESTKGRV
1001: IILCLEHTQN SDSGSMTICS KACSSSQRTS PFHDVVGYTT ENLSSSSLCS SPDDYSYDGI KLDEAETWQL RLASSTTWPG MVLAICPYLD HYFLASAGNA
1101: FYVCGFPNDS PERMKRFAVG RTRFMITSLR TYFTRIVVGD CRDGVLFYSY HEESKKLHQI YCDPAQRLVA DCFLMDANSV AVSDRKGSIA ILSCKDHSDF
1201: GMKHLEYSSP ESNLNLNCAY YMGEIAMSIK KGCNIYKLPA DDVLRSYGLS KSIDTADDTI IAGTLLGSIF VFAPISSEEY ELLEGVQAKL GIHPLTAPVL
1301: GNDHNEFRGR ENPSQARKIL DGDMLAQFLE LTNRQQESVL STPQPSPSTS KASSKQRSFP PLMLHQVVQL LERVHYALH
Arabidopsis Description
Cleavage and polyadenylation specificity factor (CPSF) A subunit protein [Source:UniProtKB/TrEMBL;Acc:Q84R20]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.