Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G243300.3 | Wheat | plastid | 97.52 | 86.63 |
| TraesCS2D01G245600.6 | Wheat | plastid | 97.19 | 86.33 |
| HORVU2Hr1G055870.14 | Barley | plastid | 95.2 | 84.63 |
| Os07t0203700-01 | Rice | cytosol, nucleus | 41.77 | 75.83 |
| Zm00001d019115_P048 | Maize | plastid | 70.14 | 62.54 |
| KXG34639 | Sorghum | plastid | 69.89 | 62.09 |
| GSMUA_Achr9P11080_001 | Banana | nucleus, plasma membrane, plastid | 55.91 | 50.07 |
| VIT_08s0007g07150.t01 | Wine grape | cytosol, nucleus, plasma membrane | 50.29 | 44.61 |
| KRH68075 | Soybean | nucleus, plastid | 48.97 | 42.68 |
| KRG96340 | Soybean | nucleus, plastid | 48.06 | 41.89 |
| Solyc10g080630.1.1 | Tomato | nucleus | 47.73 | 41.42 |
| AT3G11960.3 | Thale cress | nucleus | 47.23 | 41.41 |
| CDY08477 | Canola | nucleus | 46.4 | 41.25 |
| CDY01074 | Canola | nucleus | 45.99 | 40.91 |
| CDX73841 | Canola | nucleus, plastid | 45.33 | 40.87 |
| Bra001431.1-P | Field mustard | nucleus, plastid | 45.33 | 40.87 |
| CDY00750 | Canola | nucleus | 44.58 | 40.25 |
| Bra034797.1-P | Field mustard | nucleus | 46.4 | 38.64 |
| Os07t0203800-01 | Rice | cytosol, plastid | 4.22 | 18.15 |
| TraesCS1B01G473400.1 | Wheat | nucleus | 15.88 | 17.61 |
| TraesCS3B01G240600.1 | Wheat | cytosol | 15.05 | 17.6 |
| TraesCS6B01G135400.1 | Wheat | unclear | 16.13 | 15.89 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G258400.1 | EnsemblPlantsGene:TraesCS2B01G258400 | Gene3D:2.130.10.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | InterPro:Cleavage/polyA-sp_fac_asu_C |
| InterPro:IPR015943 | InterPro:WD40/YVTN_repeat-like_dom_sf | PANTHER:PTHR10644 | PANTHER:PTHR10644:SF6 | PFAM:PF03178 | PFAM:PF10433 |
| SEG:seg | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr2B:+:314770790..314787929
Molecular Weight (calculated)
132798.0 Da
IEP (calculated)
5.353
GRAVY (calculated)
0.042
Length
1209 amino acids
Sequence
(BLAST)
(BLAST)
0001: RFIPIGNIEL SKPGNMRDQL GRILAIDHDS AWVAISAYED AFAVVRVGRT QHVYGPNEEI VEKAKIVHAV YKTSDIRGTV WSMCFMRTRC SMDEYYPVVA
0101: MIINRKGSDA NDLSMYALAA NDGGIQYLSG YSEPGPLALE IAEIPQLDGF GLLFRAGDIL IVDLRDPKDI CCTIRISMTG SLVGEQISVE DSCRGLDVDD
0201: DVAACALLEL RDSGNNIMMD DSYMAIDGAD NPGSMKSRVI CSWSWEPDAM RGQPRLIFCL DDGEFHILEF NWDTEGLKVL PERVHRGLPC KPLLWMDRGM
0301: IAGFVEMGDG MILHLEHGRL VHKSTVQNVG PILDLAIADY HGEKQDQLFS CCGMCPEGSL RVIRNGVNVE KLLRTEPIYQ GVTGLWTLRM KRTDTYHSFL
0401: VLAFVEETRI LSVGLSFNDI SDAVGFQPEV CTLACGLIAD GLLVQIHSKG VKLCLPTSYA HPEGATLTSP VCVDWYPDVT ISVGAVGHDV VAVATSNPCC
0501: LYILRVRPLS SLQYELYETQ HVQLQYEVSC ISIPEEDSRL RTSSSAFGGD FRKRKGNNSA AEVDVRMFAV IGTHKPSVEV ISLEPDEAFR LLSIGSISVN
0601: NALGAPVSGC IPENVRFVAS ERFYILAGLR NGMLLRFESG TSKDQYLPVS FYKESFAPSL NTLLQLVAIR HIGITPVGLV PLRDSANSDI IVLSDRSWLL
0701: YASRHSLAYS SISFLPASHV TPVSSVDCPS GLLFVAENCL HLVEMVHGKR LNAQKFSVGG TPRKVLYHSD SRTLLVMRTG LTGASCSSDI VQIDPNNGIL
0801: LSRFKCELGE TAKCIQIVKI GSEQVLIVGT SKSTDRPMMP NGEAESSIKG RLIVLSLDTL GSPHECSSFI PTSNLSSSSH TGSFPEIVGY ANEEFSSNSM
0901: CSSPDDICYN QIQFEQIAGH LRSLTHVTFT GAVLAVYPYL DRYVLAAAGN TLSVFGFVNE NPHRMKKYAV SRTRFTITCL KTYASQIAAG DCRDGVLFYS
1001: YHENLRKLEL VYADPAQRLV GDVVLLDCET AVVSDRRGSI SVLSCPGLEV SESPEKNLAV QCSFFMGEIA MSIQKAAFKY RLPIGDEADP VLESAYNCVV
1101: ASTLLGSVFV MIPLTSEEHQ LLQDVQERLS LHPLTAPILG NDHAEFRRRG IPSGVPSILD GDMLVQFLEL TSEQQQTVLD DGSSVKAPRR SISVFQVMRM
1201: LERVHYALN
0101: MIINRKGSDA NDLSMYALAA NDGGIQYLSG YSEPGPLALE IAEIPQLDGF GLLFRAGDIL IVDLRDPKDI CCTIRISMTG SLVGEQISVE DSCRGLDVDD
0201: DVAACALLEL RDSGNNIMMD DSYMAIDGAD NPGSMKSRVI CSWSWEPDAM RGQPRLIFCL DDGEFHILEF NWDTEGLKVL PERVHRGLPC KPLLWMDRGM
0301: IAGFVEMGDG MILHLEHGRL VHKSTVQNVG PILDLAIADY HGEKQDQLFS CCGMCPEGSL RVIRNGVNVE KLLRTEPIYQ GVTGLWTLRM KRTDTYHSFL
0401: VLAFVEETRI LSVGLSFNDI SDAVGFQPEV CTLACGLIAD GLLVQIHSKG VKLCLPTSYA HPEGATLTSP VCVDWYPDVT ISVGAVGHDV VAVATSNPCC
0501: LYILRVRPLS SLQYELYETQ HVQLQYEVSC ISIPEEDSRL RTSSSAFGGD FRKRKGNNSA AEVDVRMFAV IGTHKPSVEV ISLEPDEAFR LLSIGSISVN
0601: NALGAPVSGC IPENVRFVAS ERFYILAGLR NGMLLRFESG TSKDQYLPVS FYKESFAPSL NTLLQLVAIR HIGITPVGLV PLRDSANSDI IVLSDRSWLL
0701: YASRHSLAYS SISFLPASHV TPVSSVDCPS GLLFVAENCL HLVEMVHGKR LNAQKFSVGG TPRKVLYHSD SRTLLVMRTG LTGASCSSDI VQIDPNNGIL
0801: LSRFKCELGE TAKCIQIVKI GSEQVLIVGT SKSTDRPMMP NGEAESSIKG RLIVLSLDTL GSPHECSSFI PTSNLSSSSH TGSFPEIVGY ANEEFSSNSM
0901: CSSPDDICYN QIQFEQIAGH LRSLTHVTFT GAVLAVYPYL DRYVLAAAGN TLSVFGFVNE NPHRMKKYAV SRTRFTITCL KTYASQIAAG DCRDGVLFYS
1001: YHENLRKLEL VYADPAQRLV GDVVLLDCET AVVSDRRGSI SVLSCPGLEV SESPEKNLAV QCSFFMGEIA MSIQKAAFKY RLPIGDEADP VLESAYNCVV
1101: ASTLLGSVFV MIPLTSEEHQ LLQDVQERLS LHPLTAPILG NDHAEFRRRG IPSGVPSILD GDMLVQFLEL TSEQQQTVLD DGSSVKAPRR SISVFQVMRM
1201: LERVHYALN
0001: MAAPEDESSA QSQSSPATAA PTPPPSSSPS SAGDHYLAKC ILRPSVVLQV AYGYFRSPSS RDIVFGKETC IELVVIGEDG IVESVCEQYV FGTIKDLAVI
0101: PQSSKLYSNS LQMGKDLLAV LSDSGKLSFL SFSNEMHRFS PIQHVQLSTP GNSRIQLGRM LTIDSSGLFL AVSAYHDRFA LFSLSTSSMG DIIHQRISYP
0201: SEDGGNGSSI QAISGTIWSM CFISKDFNES KEYAPILAIV INRKGSLMNE LALFRWNVKE ESICLISEYV ETGALAHSIV EVPHSSGFAF LFRIGDVLLM
0301: DLRDPQNPCC LFRTSLDFVP ASLMEEHFVE ESCRVQDGDD EGCNVVVCAL LELRDHEVRD HDPMFIDTES DIGKLSSKNV SSWTWEPENN HNPRMIICLD
0401: NGDFFMFELI YEDDGVKVNL SECLYKGLPC KDILWIEGGF LATFAEMADG TVFKLGTEKL HWMSSIQNIA PILDFSVMDD QNEKRDQIFA CCGVTPEGSL
0501: RIIRSGINVE KLLKTAPVYQ GITGTWTVKM KLTDVYHSFL VLSFVEETRV LSVGLSFKDV TDSVGFQSDV CTFACGLVAD GLLVQIHQDA IRLCMPTMDA
0601: HSDGIPVSSP FFSSWFPENV SISLGAVGQN LIVVSTSNPC FLSILGVKSV SSQCCEIYEI QRVTLQYEVS CISVPQKHIG KKRSRDSSPD NFCKAAIPSA
0701: MEQGYTFLIG THKPSVEVLS FTEDGVGVRV LASGLVSLTN TMGTVISGCI PQDVRLVLVD QLYVLSGLRN GMLLRFEWAP FSNSSGLNCP DYFSHCKEEM
0801: DTVVGKKDNL PVNLLLIATR RIGITPVFLV PFSDSLDSDI IALSDRPWLL QTARQSLSYT SISFQPSTHA TPVCSFECPQ GILFVSENCL HLVEMVHSKR
0901: RNAQKFQLGG TPRKVIYHSE SKLLIVMRTD LYDTCTSDIC CVDPLSGSVL SSYKLKPGET GKSMELVRVG NEHVLVVGTS LSSGPAILPS GEAESTKGRV
1001: IILCLEHTQN SDSGSMTICS KACSSSQRTS PFHDVVGYTT ENLSSSSLCS SPDDYSYDGI KLDEAETWQL RLASSTTWPG MVLAICPYLD HYFLASAGNA
1101: FYVCGFPNDS PERMKRFAVG RTRFMITSLR TYFTRIVVGD CRDGVLFYSY HEESKKLHQI YCDPAQRLVA DCFLMDANSV AVSDRKGSIA ILSCKDHSDF
1201: GMKHLEYSSP ESNLNLNCAY YMGEIAMSIK KGCNIYKLPA DDVLRSYGLS KSIDTADDTI IAGTLLGSIF VFAPISSEEY ELLEGVQAKL GIHPLTAPVL
1301: GNDHNEFRGR ENPSQARKIL DGDMLAQFLE LTNRQQESVL STPQPSPSTS KASSKQRSFP PLMLHQVVQL LERVHYALH
0101: PQSSKLYSNS LQMGKDLLAV LSDSGKLSFL SFSNEMHRFS PIQHVQLSTP GNSRIQLGRM LTIDSSGLFL AVSAYHDRFA LFSLSTSSMG DIIHQRISYP
0201: SEDGGNGSSI QAISGTIWSM CFISKDFNES KEYAPILAIV INRKGSLMNE LALFRWNVKE ESICLISEYV ETGALAHSIV EVPHSSGFAF LFRIGDVLLM
0301: DLRDPQNPCC LFRTSLDFVP ASLMEEHFVE ESCRVQDGDD EGCNVVVCAL LELRDHEVRD HDPMFIDTES DIGKLSSKNV SSWTWEPENN HNPRMIICLD
0401: NGDFFMFELI YEDDGVKVNL SECLYKGLPC KDILWIEGGF LATFAEMADG TVFKLGTEKL HWMSSIQNIA PILDFSVMDD QNEKRDQIFA CCGVTPEGSL
0501: RIIRSGINVE KLLKTAPVYQ GITGTWTVKM KLTDVYHSFL VLSFVEETRV LSVGLSFKDV TDSVGFQSDV CTFACGLVAD GLLVQIHQDA IRLCMPTMDA
0601: HSDGIPVSSP FFSSWFPENV SISLGAVGQN LIVVSTSNPC FLSILGVKSV SSQCCEIYEI QRVTLQYEVS CISVPQKHIG KKRSRDSSPD NFCKAAIPSA
0701: MEQGYTFLIG THKPSVEVLS FTEDGVGVRV LASGLVSLTN TMGTVISGCI PQDVRLVLVD QLYVLSGLRN GMLLRFEWAP FSNSSGLNCP DYFSHCKEEM
0801: DTVVGKKDNL PVNLLLIATR RIGITPVFLV PFSDSLDSDI IALSDRPWLL QTARQSLSYT SISFQPSTHA TPVCSFECPQ GILFVSENCL HLVEMVHSKR
0901: RNAQKFQLGG TPRKVIYHSE SKLLIVMRTD LYDTCTSDIC CVDPLSGSVL SSYKLKPGET GKSMELVRVG NEHVLVVGTS LSSGPAILPS GEAESTKGRV
1001: IILCLEHTQN SDSGSMTICS KACSSSQRTS PFHDVVGYTT ENLSSSSLCS SPDDYSYDGI KLDEAETWQL RLASSTTWPG MVLAICPYLD HYFLASAGNA
1101: FYVCGFPNDS PERMKRFAVG RTRFMITSLR TYFTRIVVGD CRDGVLFYSY HEESKKLHQI YCDPAQRLVA DCFLMDANSV AVSDRKGSIA ILSCKDHSDF
1201: GMKHLEYSSP ESNLNLNCAY YMGEIAMSIK KGCNIYKLPA DDVLRSYGLS KSIDTADDTI IAGTLLGSIF VFAPISSEEY ELLEGVQAKL GIHPLTAPVL
1301: GNDHNEFRGR ENPSQARKIL DGDMLAQFLE LTNRQQESVL STPQPSPSTS KASSKQRSFP PLMLHQVVQL LERVHYALH
Arabidopsis Description
Cleavage and polyadenylation specificity factor (CPSF) A subunit protein [Source:UniProtKB/TrEMBL;Acc:Q84R20]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.