Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- nucleus 1
- plasma membrane 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G245600.6 | Wheat | plastid | 98.75 | 98.75 |
| TraesCS2B01G258400.1 | Wheat | cytosol, nucleus | 86.63 | 97.52 |
| HORVU2Hr1G055870.14 | Barley | plastid | 96.03 | 96.1 |
| Os07t0203700-01 | Rice | cytosol, nucleus | 37.18 | 75.98 |
| Zm00001d019115_P048 | Maize | plastid | 68.92 | 69.17 |
| KXG34639 | Sorghum | plastid | 68.63 | 68.63 |
| GSMUA_Achr9P11080_001 | Banana | nucleus, plasma membrane, plastid | 53.93 | 54.37 |
| Os07t0203800-01 | Rice | cytosol, plastid | 10.58 | 51.25 |
| VIT_08s0007g07150.t01 | Wine grape | cytosol, nucleus, plasma membrane | 49.01 | 48.94 |
| KRH68075 | Soybean | nucleus, plastid | 47.76 | 46.86 |
| AT3G11960.3 | Thale cress | nucleus | 46.73 | 46.12 |
| KRG96340 | Soybean | nucleus, plastid | 46.88 | 46.0 |
| Solyc10g080630.1.1 | Tomato | nucleus | 47.02 | 45.94 |
| CDY08477 | Canola | nucleus | 45.85 | 45.88 |
| CDX73841 | Canola | nucleus, plastid | 44.97 | 45.64 |
| Bra001431.1-P | Field mustard | nucleus, plastid | 44.97 | 45.64 |
| CDY01074 | Canola | nucleus | 45.48 | 45.55 |
| CDY00750 | Canola | nucleus | 44.31 | 45.03 |
| Bra034797.1-P | Field mustard | nucleus | 46.14 | 43.25 |
| TraesCS3A01G210100.2 | Wheat | nucleus | 14.84 | 18.58 |
| TraesCS6A01G107200.1 | Wheat | nucleus | 15.58 | 17.28 |
Protein Annotations
| EnsemblPlants:TraesCS2A01G243300.3 | EnsemblPlantsGene:TraesCS2A01G243300 | Gene3D:2.130.10.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | InterPro:Cleavage/polyA-sp_fac_asu_C |
| InterPro:IPR015943 | InterPro:WD40/YVTN_repeat-like_dom_sf | ncoils:Coil | PANTHER:PTHR10644 | PANTHER:PTHR10644:SF6 | PFAM:PF03178 |
| PFAM:PF10433 | SEG:seg | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr2A:-:341921013..341934912
Molecular Weight (calculated)
148508.0 Da
IEP (calculated)
5.618
GRAVY (calculated)
0.068
Length
1361 amino acids
Sequence
(BLAST)
(BLAST)
0001: MESSASGDGS SATTAAVAAA AAVASSSSGP STSASAFSAG VSGGASATHY LAKRVLHGSA VQHVARGHFR SEHLWEIVLC KGTSLELVVV GEDGVLQSIC
0101: EQSTFGIVKD VGVLDWRFKH FGIWPEIEGK EILVLLSDSG KLSLLYFCCQ MHRFIPIGNI ELSKPGNMRD QLGRILAIDH DSAWVAISAY EDAFAVVRVG
0201: RTQHVYGPNK EIVEKAKIVH AVYKTSDIRG TVWSMCFMRT RCSMDEYYPV VAMIINRKGS DANDLSMYAL AANDGGIQYL SGYSEPGPLA LEIAEIPQLD
0301: GFGLLFRAGD ILIVDLRDPK DICCTIRISM TGSLVGEQIS VEDSCRGLDV DDDVAACALL ELRDSGNNIM MDDSYMAIDG ADNPGSMKSR VICSWSWEPD
0401: AMRGQPRLIF CLDDGEFHIL EFNWDTEGLK VLPERVHRGL PCKPLLWMDR GMIAGFVEMG DGMILHLEHG RLVHRSTVQN VGPILDLAIA DYHGEKQDQL
0501: FSCCGMCPEG SLRVIRNGVN VEKLLRTEPI YQGVTGLWTL RMKKTDTYHS FLVLAFVEET RILSVGLSFN DISDAVGFQT EVCTLACGLI ADGLLVQIHS
0601: KGVKLCLPTS YAHPEGATLT SPVCVDWYPD VTISVGAVGH DVVAVATSNP CCLYILRVRP LSSLQYELYE TQHVQLQYEV SCISIPEEDL RLRTSSSAFG
0701: GDFRKRKGNN SAAEVDVRMF AVIGTHKPSV EVISLEPDEA FRLLSIGSIS VNNALGAPVS GCIPENVRFV ASERFYILAG LRNGMLLRFE SGTSKDQYLP
0801: GSFYKESFAP SLNALLQLVA IRHIGITPVG LVPLHDSANS DIIVLSDRSW LLYASRHSLA YSSISFLPAS HVTPVSSVDC PSGLLFVAEN CLHLVEMVHG
0901: KRLNAQKFSV GGTPRKVLYH SDSRTLLVMR TGLTGASCSS DIVQIDPNNG ILLSRFKCEL GETAKCIQIA KIGSEQVLIV GTSKSTDRPM MPNGEAESSI
1001: KGRLIVLSLD TLGSPHECSS FIPTSNLSSS SHTGSFPEIV GYANEDFSSN SMCSSPDDIC YNQIQFEQIA GHLRSLTHVT FTGAVLAVYP YLDRYVLAAA
1101: GNTLSVFGFV NENPHRMKKY AVSRTRFTIT CLKTYASQIA AGDCRDGVLF YSYHENLRKL ELVYADPAQR LVGDVVLLDC ETAVVSDRRG SISVLSCPGL
1201: EVSESPEKNL AVQCSFFMGE IAMSIQKAAF KYRLPIGDET DPVLESAYNC VVASTLLGSV FVMIPLTSEE HQLLQDVQER LSLHPLTAPI LGNDHAEFRR
1301: RGIPSGVPSI LDGDMLVQFL ELTSEQQQTV LDDGSSVKAP HRSIPVFQVM RMLERVHYAL N
0101: EQSTFGIVKD VGVLDWRFKH FGIWPEIEGK EILVLLSDSG KLSLLYFCCQ MHRFIPIGNI ELSKPGNMRD QLGRILAIDH DSAWVAISAY EDAFAVVRVG
0201: RTQHVYGPNK EIVEKAKIVH AVYKTSDIRG TVWSMCFMRT RCSMDEYYPV VAMIINRKGS DANDLSMYAL AANDGGIQYL SGYSEPGPLA LEIAEIPQLD
0301: GFGLLFRAGD ILIVDLRDPK DICCTIRISM TGSLVGEQIS VEDSCRGLDV DDDVAACALL ELRDSGNNIM MDDSYMAIDG ADNPGSMKSR VICSWSWEPD
0401: AMRGQPRLIF CLDDGEFHIL EFNWDTEGLK VLPERVHRGL PCKPLLWMDR GMIAGFVEMG DGMILHLEHG RLVHRSTVQN VGPILDLAIA DYHGEKQDQL
0501: FSCCGMCPEG SLRVIRNGVN VEKLLRTEPI YQGVTGLWTL RMKKTDTYHS FLVLAFVEET RILSVGLSFN DISDAVGFQT EVCTLACGLI ADGLLVQIHS
0601: KGVKLCLPTS YAHPEGATLT SPVCVDWYPD VTISVGAVGH DVVAVATSNP CCLYILRVRP LSSLQYELYE TQHVQLQYEV SCISIPEEDL RLRTSSSAFG
0701: GDFRKRKGNN SAAEVDVRMF AVIGTHKPSV EVISLEPDEA FRLLSIGSIS VNNALGAPVS GCIPENVRFV ASERFYILAG LRNGMLLRFE SGTSKDQYLP
0801: GSFYKESFAP SLNALLQLVA IRHIGITPVG LVPLHDSANS DIIVLSDRSW LLYASRHSLA YSSISFLPAS HVTPVSSVDC PSGLLFVAEN CLHLVEMVHG
0901: KRLNAQKFSV GGTPRKVLYH SDSRTLLVMR TGLTGASCSS DIVQIDPNNG ILLSRFKCEL GETAKCIQIA KIGSEQVLIV GTSKSTDRPM MPNGEAESSI
1001: KGRLIVLSLD TLGSPHECSS FIPTSNLSSS SHTGSFPEIV GYANEDFSSN SMCSSPDDIC YNQIQFEQIA GHLRSLTHVT FTGAVLAVYP YLDRYVLAAA
1101: GNTLSVFGFV NENPHRMKKY AVSRTRFTIT CLKTYASQIA AGDCRDGVLF YSYHENLRKL ELVYADPAQR LVGDVVLLDC ETAVVSDRRG SISVLSCPGL
1201: EVSESPEKNL AVQCSFFMGE IAMSIQKAAF KYRLPIGDET DPVLESAYNC VVASTLLGSV FVMIPLTSEE HQLLQDVQER LSLHPLTAPI LGNDHAEFRR
1301: RGIPSGVPSI LDGDMLVQFL ELTSEQQQTV LDDGSSVKAP HRSIPVFQVM RMLERVHYAL N
0001: MAAPEDESSA QSQSSPATAA PTPPPSSSPS SAGDHYLAKC ILRPSVVLQV AYGYFRSPSS RDIVFGKETC IELVVIGEDG IVESVCEQYV FGTIKDLAVI
0101: PQSSKLYSNS LQMGKDLLAV LSDSGKLSFL SFSNEMHRFS PIQHVQLSTP GNSRIQLGRM LTIDSSGLFL AVSAYHDRFA LFSLSTSSMG DIIHQRISYP
0201: SEDGGNGSSI QAISGTIWSM CFISKDFNES KEYAPILAIV INRKGSLMNE LALFRWNVKE ESICLISEYV ETGALAHSIV EVPHSSGFAF LFRIGDVLLM
0301: DLRDPQNPCC LFRTSLDFVP ASLMEEHFVE ESCRVQDGDD EGCNVVVCAL LELRDHEVRD HDPMFIDTES DIGKLSSKNV SSWTWEPENN HNPRMIICLD
0401: NGDFFMFELI YEDDGVKVNL SECLYKGLPC KDILWIEGGF LATFAEMADG TVFKLGTEKL HWMSSIQNIA PILDFSVMDD QNEKRDQIFA CCGVTPEGSL
0501: RIIRSGINVE KLLKTAPVYQ GITGTWTVKM KLTDVYHSFL VLSFVEETRV LSVGLSFKDV TDSVGFQSDV CTFACGLVAD GLLVQIHQDA IRLCMPTMDA
0601: HSDGIPVSSP FFSSWFPENV SISLGAVGQN LIVVSTSNPC FLSILGVKSV SSQCCEIYEI QRVTLQYEVS CISVPQKHIG KKRSRDSSPD NFCKAAIPSA
0701: MEQGYTFLIG THKPSVEVLS FTEDGVGVRV LASGLVSLTN TMGTVISGCI PQDVRLVLVD QLYVLSGLRN GMLLRFEWAP FSNSSGLNCP DYFSHCKEEM
0801: DTVVGKKDNL PVNLLLIATR RIGITPVFLV PFSDSLDSDI IALSDRPWLL QTARQSLSYT SISFQPSTHA TPVCSFECPQ GILFVSENCL HLVEMVHSKR
0901: RNAQKFQLGG TPRKVIYHSE SKLLIVMRTD LYDTCTSDIC CVDPLSGSVL SSYKLKPGET GKSMELVRVG NEHVLVVGTS LSSGPAILPS GEAESTKGRV
1001: IILCLEHTQN SDSGSMTICS KACSSSQRTS PFHDVVGYTT ENLSSSSLCS SPDDYSYDGI KLDEAETWQL RLASSTTWPG MVLAICPYLD HYFLASAGNA
1101: FYVCGFPNDS PERMKRFAVG RTRFMITSLR TYFTRIVVGD CRDGVLFYSY HEESKKLHQI YCDPAQRLVA DCFLMDANSV AVSDRKGSIA ILSCKDHSDF
1201: GMKHLEYSSP ESNLNLNCAY YMGEIAMSIK KGCNIYKLPA DDVLRSYGLS KSIDTADDTI IAGTLLGSIF VFAPISSEEY ELLEGVQAKL GIHPLTAPVL
1301: GNDHNEFRGR ENPSQARKIL DGDMLAQFLE LTNRQQESVL STPQPSPSTS KASSKQRSFP PLMLHQVVQL LERVHYALH
0101: PQSSKLYSNS LQMGKDLLAV LSDSGKLSFL SFSNEMHRFS PIQHVQLSTP GNSRIQLGRM LTIDSSGLFL AVSAYHDRFA LFSLSTSSMG DIIHQRISYP
0201: SEDGGNGSSI QAISGTIWSM CFISKDFNES KEYAPILAIV INRKGSLMNE LALFRWNVKE ESICLISEYV ETGALAHSIV EVPHSSGFAF LFRIGDVLLM
0301: DLRDPQNPCC LFRTSLDFVP ASLMEEHFVE ESCRVQDGDD EGCNVVVCAL LELRDHEVRD HDPMFIDTES DIGKLSSKNV SSWTWEPENN HNPRMIICLD
0401: NGDFFMFELI YEDDGVKVNL SECLYKGLPC KDILWIEGGF LATFAEMADG TVFKLGTEKL HWMSSIQNIA PILDFSVMDD QNEKRDQIFA CCGVTPEGSL
0501: RIIRSGINVE KLLKTAPVYQ GITGTWTVKM KLTDVYHSFL VLSFVEETRV LSVGLSFKDV TDSVGFQSDV CTFACGLVAD GLLVQIHQDA IRLCMPTMDA
0601: HSDGIPVSSP FFSSWFPENV SISLGAVGQN LIVVSTSNPC FLSILGVKSV SSQCCEIYEI QRVTLQYEVS CISVPQKHIG KKRSRDSSPD NFCKAAIPSA
0701: MEQGYTFLIG THKPSVEVLS FTEDGVGVRV LASGLVSLTN TMGTVISGCI PQDVRLVLVD QLYVLSGLRN GMLLRFEWAP FSNSSGLNCP DYFSHCKEEM
0801: DTVVGKKDNL PVNLLLIATR RIGITPVFLV PFSDSLDSDI IALSDRPWLL QTARQSLSYT SISFQPSTHA TPVCSFECPQ GILFVSENCL HLVEMVHSKR
0901: RNAQKFQLGG TPRKVIYHSE SKLLIVMRTD LYDTCTSDIC CVDPLSGSVL SSYKLKPGET GKSMELVRVG NEHVLVVGTS LSSGPAILPS GEAESTKGRV
1001: IILCLEHTQN SDSGSMTICS KACSSSQRTS PFHDVVGYTT ENLSSSSLCS SPDDYSYDGI KLDEAETWQL RLASSTTWPG MVLAICPYLD HYFLASAGNA
1101: FYVCGFPNDS PERMKRFAVG RTRFMITSLR TYFTRIVVGD CRDGVLFYSY HEESKKLHQI YCDPAQRLVA DCFLMDANSV AVSDRKGSIA ILSCKDHSDF
1201: GMKHLEYSSP ESNLNLNCAY YMGEIAMSIK KGCNIYKLPA DDVLRSYGLS KSIDTADDTI IAGTLLGSIF VFAPISSEEY ELLEGVQAKL GIHPLTAPVL
1301: GNDHNEFRGR ENPSQARKIL DGDMLAQFLE LTNRQQESVL STPQPSPSTS KASSKQRSFP PLMLHQVVQL LERVHYALH
Arabidopsis Description
Cleavage and polyadenylation specificity factor (CPSF) A subunit protein [Source:UniProtKB/TrEMBL;Acc:Q84R20]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.