Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 3
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX73841 | Canola | nucleus, plastid | 100.0 | 100.0 |
| AT3G11960.3 | Thale cress | nucleus | 78.08 | 75.92 |
| Bra034797.1-P | Field mustard | nucleus | 81.73 | 75.48 |
| VIT_08s0007g07150.t01 | Wine grape | cytosol, nucleus, plasma membrane | 63.31 | 62.29 |
| KRH68075 | Soybean | nucleus, plastid | 58.46 | 56.52 |
| KRG96340 | Soybean | nucleus, plastid | 57.57 | 55.66 |
| Solyc10g080630.1.1 | Tomato | nucleus | 57.72 | 55.56 |
| GSMUA_Achr9P11080_001 | Banana | nucleus, plasma membrane, plastid | 53.24 | 52.89 |
| Os07t0203700-01 | Rice | cytosol, nucleus | 23.64 | 47.6 |
| KXG34639 | Sorghum | plastid | 47.13 | 46.44 |
| Zm00001d019115_P048 | Maize | plastid | 46.91 | 46.39 |
| TraesCS2B01G258400.1 | Wheat | cytosol, nucleus | 40.87 | 45.33 |
| HORVU2Hr1G055870.14 | Barley | plastid | 45.64 | 45.0 |
| TraesCS2A01G243300.3 | Wheat | plastid | 45.64 | 44.97 |
| TraesCS2D01G245600.6 | Wheat | plastid | 45.64 | 44.97 |
| Os07t0203800-01 | Rice | cytosol, plastid | 7.53 | 35.94 |
| Bra034172.1-P | Field mustard | nucleus, plastid, vacuole | 18.05 | 19.93 |
| Bra029577.1-P | Field mustard | nucleus, peroxisome, plastid | 14.62 | 18.05 |
| Bra020884.1-P | Field mustard | cytosol | 14.69 | 15.37 |
Protein Annotations
| EnsemblPlants:Bra001431.1 | EnsemblPlants:Bra001431.1-P | EnsemblPlantsGene:Bra001431 | Gene3D:3.30.980.30 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | InterPro:Cleavage/polyA-sp_fac_asu_C |
| PANTHER:PTHR10644 | PANTHER:PTHR10644:SF6 | PFAM:PF03178 | PFAM:PF10433 | SEG:seg | UniParc:UPI000254078F |
| UniProt:M4CB52 | MapMan:35.1 | : | : | : | : |
Description
AT3G11960 (E=0.0) | cleavage and polyadenylation specificity factor (CPSF) A subunit C-terminal domain-containing protein
Coordinates
chrA03:+:16346557..16352651
Molecular Weight (calculated)
147159.0 Da
IEP (calculated)
5.122
GRAVY (calculated)
0.028
Length
1341 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAAPEDESSA HSQSSSAATA TPTPPPSSVG DHYLAKCVLP PSVVLQVAYG YFRSPSSRDV VFGKETCLEL VVIGEDGFVE SVCEQNVFGT IKDLAVIPRS
0101: KMGKDLLAVL SDSGKLSFLS FSNEMHRFLP IQHVQLSSPG NSRTQLGRML TVDSRQVFHL TMIFGLFLAV SAYHDRFALF SLSSSSMADI IHERIFYPSE
0201: DGGKTSSVQE LSGTIWSMCF ISKGFNESKG YDPVLAIVLN RKGSLLNELV LFRWNIKEES ICLISEYVEA GALAHSIVEV PHSSGFAFLF RIGDALLMDL
0301: RDPQNPCCLV RTSLDLVPPA SLVEEHFVEE SCRVQDGDDE GLSNVAASAL LKLSDWDPMF IDTESDIGKL SSKHVSSWTW EPDHNYNPRM IICLDDGEFF
0401: VFELIYEDDG VKINISECLY KGLPCKEILW VEGGFLATFS EMADGTVFKL GKEKLHWMSS IQNIAPILDF SVVDDQNEKR DQMFACCGVT PEGSLRIIRS
0501: GVNVEKLLKT APVYQGITGT WTVKMKLPDV YHSFLVLSFV EETRVLSVGL SFKDVTDSVG FQPDVCTLAC GLVADGLLVQ IHQDAVRLCM ANMDGSSPFV
0601: SSWFPENVSI SLGAVAEDLI VVSTSNPCFL SVLGVRSVSS HCCEIYEIQR VELQYEVSCI SIPQKSIGKK RCKAAILSGM ERGYTFLIGT HKPSVEVLSF
0701: SEDDGGGLRV LASGMVSLTN TMGTAIRGCI PQDVRLVLVD QVYVLSGLRN GMLLRFEWPP FSHSSGLNKE EMDIVVGERE NLPIDLVLIA TRRIGITPVF
0801: LVPFSDSLDS DIIALSDRPW LLHTARQSLS YTSISFQAST HATPVCSSEC PQGILFVAEN SLHLVEMVHS KRLNAQKFHL GGTPRKVIYH SESKLLIVMR
0901: TDLCDAGTSD ICCVDPLSGS VLSSYKLKPG ETGKSMELVR VGNEQVLVVG TSLSSGPAIL PSGEAESTKG RILILCLVHT QNSDSGSMTI CSKDGLSSQR
1001: TSPFRDEQLS SSSLCSSPDD NSYDDDIKLD EAETWHLKLA SATTWPGMVL AICPYLDRFF LASAGNAFYV CGFPNDSPDK MKRFAVGRTR FMITSLRTYL
1101: TRIVVGDCRD GVLFYSYHED VKKLHQVYCD PAQRLVADCF LMDVNSVAVS DRKGSIAILS CKDHSDFEYS NPESNLNLNC AYHMGEVAMA IKKGGSIYKL
1201: PAGDVLRSYG LSKSTDAADD TIIAGTLLGS IFVFAPISRE EYELLEAVQA KLVVHPLTAP VLGNDHKEFR GRENPSQATK ILDGDMLAQF LELTNRQQES
1301: VLSTPQPSPS SLKASSKQCP SPPLMLHQVV QLLERVHYAL H
0101: KMGKDLLAVL SDSGKLSFLS FSNEMHRFLP IQHVQLSSPG NSRTQLGRML TVDSRQVFHL TMIFGLFLAV SAYHDRFALF SLSSSSMADI IHERIFYPSE
0201: DGGKTSSVQE LSGTIWSMCF ISKGFNESKG YDPVLAIVLN RKGSLLNELV LFRWNIKEES ICLISEYVEA GALAHSIVEV PHSSGFAFLF RIGDALLMDL
0301: RDPQNPCCLV RTSLDLVPPA SLVEEHFVEE SCRVQDGDDE GLSNVAASAL LKLSDWDPMF IDTESDIGKL SSKHVSSWTW EPDHNYNPRM IICLDDGEFF
0401: VFELIYEDDG VKINISECLY KGLPCKEILW VEGGFLATFS EMADGTVFKL GKEKLHWMSS IQNIAPILDF SVVDDQNEKR DQMFACCGVT PEGSLRIIRS
0501: GVNVEKLLKT APVYQGITGT WTVKMKLPDV YHSFLVLSFV EETRVLSVGL SFKDVTDSVG FQPDVCTLAC GLVADGLLVQ IHQDAVRLCM ANMDGSSPFV
0601: SSWFPENVSI SLGAVAEDLI VVSTSNPCFL SVLGVRSVSS HCCEIYEIQR VELQYEVSCI SIPQKSIGKK RCKAAILSGM ERGYTFLIGT HKPSVEVLSF
0701: SEDDGGGLRV LASGMVSLTN TMGTAIRGCI PQDVRLVLVD QVYVLSGLRN GMLLRFEWPP FSHSSGLNKE EMDIVVGERE NLPIDLVLIA TRRIGITPVF
0801: LVPFSDSLDS DIIALSDRPW LLHTARQSLS YTSISFQAST HATPVCSSEC PQGILFVAEN SLHLVEMVHS KRLNAQKFHL GGTPRKVIYH SESKLLIVMR
0901: TDLCDAGTSD ICCVDPLSGS VLSSYKLKPG ETGKSMELVR VGNEQVLVVG TSLSSGPAIL PSGEAESTKG RILILCLVHT QNSDSGSMTI CSKDGLSSQR
1001: TSPFRDEQLS SSSLCSSPDD NSYDDDIKLD EAETWHLKLA SATTWPGMVL AICPYLDRFF LASAGNAFYV CGFPNDSPDK MKRFAVGRTR FMITSLRTYL
1101: TRIVVGDCRD GVLFYSYHED VKKLHQVYCD PAQRLVADCF LMDVNSVAVS DRKGSIAILS CKDHSDFEYS NPESNLNLNC AYHMGEVAMA IKKGGSIYKL
1201: PAGDVLRSYG LSKSTDAADD TIIAGTLLGS IFVFAPISRE EYELLEAVQA KLVVHPLTAP VLGNDHKEFR GRENPSQATK ILDGDMLAQF LELTNRQQES
1301: VLSTPQPSPS SLKASSKQCP SPPLMLHQVV QLLERVHYAL H
0001: MAAPEDESSA QSQSSPATAA PTPPPSSSPS SAGDHYLAKC ILRPSVVLQV AYGYFRSPSS RDIVFGKETC IELVVIGEDG IVESVCEQYV FGTIKDLAVI
0101: PQSSKLYSNS LQMGKDLLAV LSDSGKLSFL SFSNEMHRFS PIQHVQLSTP GNSRIQLGRM LTIDSSGLFL AVSAYHDRFA LFSLSTSSMG DIIHQRISYP
0201: SEDGGNGSSI QAISGTIWSM CFISKDFNES KEYAPILAIV INRKGSLMNE LALFRWNVKE ESICLISEYV ETGALAHSIV EVPHSSGFAF LFRIGDVLLM
0301: DLRDPQNPCC LFRTSLDFVP ASLMEEHFVE ESCRVQDGDD EGCNVVVCAL LELRDHEVRD HDPMFIDTES DIGKLSSKNV SSWTWEPENN HNPRMIICLD
0401: NGDFFMFELI YEDDGVKVNL SECLYKGLPC KDILWIEGGF LATFAEMADG TVFKLGTEKL HWMSSIQNIA PILDFSVMDD QNEKRDQIFA CCGVTPEGSL
0501: RIIRSGINVE KLLKTAPVYQ GITGTWTVKM KLTDVYHSFL VLSFVEETRV LSVGLSFKDV TDSVGFQSDV CTFACGLVAD GLLVQIHQDA IRLCMPTMDA
0601: HSDGIPVSSP FFSSWFPENV SISLGAVGQN LIVVSTSNPC FLSILGVKSV SSQCCEIYEI QRVTLQYEVS CISVPQKHIG KKRSRDSSPD NFCKAAIPSA
0701: MEQGYTFLIG THKPSVEVLS FTEDGVGVRV LASGLVSLTN TMGTVISGCI PQDVRLVLVD QLYVLSGLRN GMLLRFEWAP FSNSSGLNCP DYFSHCKEEM
0801: DTVVGKKDNL PVNLLLIATR RIGITPVFLV PFSDSLDSDI IALSDRPWLL QTARQSLSYT SISFQPSTHA TPVCSFECPQ GILFVSENCL HLVEMVHSKR
0901: RNAQKFQLGG TPRKVIYHSE SKLLIVMRTD LYDTCTSDIC CVDPLSGSVL SSYKLKPGET GKSMELVRVG NEHVLVVGTS LSSGPAILPS GEAESTKGRV
1001: IILCLEHTQN SDSGSMTICS KACSSSQRTS PFHDVVGYTT ENLSSSSLCS SPDDYSYDGI KLDEAETWQL RLASSTTWPG MVLAICPYLD HYFLASAGNA
1101: FYVCGFPNDS PERMKRFAVG RTRFMITSLR TYFTRIVVGD CRDGVLFYSY HEESKKLHQI YCDPAQRLVA DCFLMDANSV AVSDRKGSIA ILSCKDHSDF
1201: GMKHLEYSSP ESNLNLNCAY YMGEIAMSIK KGCNIYKLPA DDVLRSYGLS KSIDTADDTI IAGTLLGSIF VFAPISSEEY ELLEGVQAKL GIHPLTAPVL
1301: GNDHNEFRGR ENPSQARKIL DGDMLAQFLE LTNRQQESVL STPQPSPSTS KASSKQRSFP PLMLHQVVQL LERVHYALH
0101: PQSSKLYSNS LQMGKDLLAV LSDSGKLSFL SFSNEMHRFS PIQHVQLSTP GNSRIQLGRM LTIDSSGLFL AVSAYHDRFA LFSLSTSSMG DIIHQRISYP
0201: SEDGGNGSSI QAISGTIWSM CFISKDFNES KEYAPILAIV INRKGSLMNE LALFRWNVKE ESICLISEYV ETGALAHSIV EVPHSSGFAF LFRIGDVLLM
0301: DLRDPQNPCC LFRTSLDFVP ASLMEEHFVE ESCRVQDGDD EGCNVVVCAL LELRDHEVRD HDPMFIDTES DIGKLSSKNV SSWTWEPENN HNPRMIICLD
0401: NGDFFMFELI YEDDGVKVNL SECLYKGLPC KDILWIEGGF LATFAEMADG TVFKLGTEKL HWMSSIQNIA PILDFSVMDD QNEKRDQIFA CCGVTPEGSL
0501: RIIRSGINVE KLLKTAPVYQ GITGTWTVKM KLTDVYHSFL VLSFVEETRV LSVGLSFKDV TDSVGFQSDV CTFACGLVAD GLLVQIHQDA IRLCMPTMDA
0601: HSDGIPVSSP FFSSWFPENV SISLGAVGQN LIVVSTSNPC FLSILGVKSV SSQCCEIYEI QRVTLQYEVS CISVPQKHIG KKRSRDSSPD NFCKAAIPSA
0701: MEQGYTFLIG THKPSVEVLS FTEDGVGVRV LASGLVSLTN TMGTVISGCI PQDVRLVLVD QLYVLSGLRN GMLLRFEWAP FSNSSGLNCP DYFSHCKEEM
0801: DTVVGKKDNL PVNLLLIATR RIGITPVFLV PFSDSLDSDI IALSDRPWLL QTARQSLSYT SISFQPSTHA TPVCSFECPQ GILFVSENCL HLVEMVHSKR
0901: RNAQKFQLGG TPRKVIYHSE SKLLIVMRTD LYDTCTSDIC CVDPLSGSVL SSYKLKPGET GKSMELVRVG NEHVLVVGTS LSSGPAILPS GEAESTKGRV
1001: IILCLEHTQN SDSGSMTICS KACSSSQRTS PFHDVVGYTT ENLSSSSLCS SPDDYSYDGI KLDEAETWQL RLASSTTWPG MVLAICPYLD HYFLASAGNA
1101: FYVCGFPNDS PERMKRFAVG RTRFMITSLR TYFTRIVVGD CRDGVLFYSY HEESKKLHQI YCDPAQRLVA DCFLMDANSV AVSDRKGSIA ILSCKDHSDF
1201: GMKHLEYSSP ESNLNLNCAY YMGEIAMSIK KGCNIYKLPA DDVLRSYGLS KSIDTADDTI IAGTLLGSIF VFAPISSEEY ELLEGVQAKL GIHPLTAPVL
1301: GNDHNEFRGR ENPSQARKIL DGDMLAQFLE LTNRQQESVL STPQPSPSTS KASSKQRSFP PLMLHQVVQL LERVHYALH
Arabidopsis Description
Cleavage and polyadenylation specificity factor (CPSF) A subunit protein [Source:UniProtKB/TrEMBL;Acc:Q84R20]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.