Factsheet for Bra029577.1-P

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000702.1-P
Bra000849.1-P
Bra002667.1-P
Bra003577.1-P
Bra004232.1-P
Bra008447.1-P
Bra010248.1-P
Bra011139.1-P
Bra011536.1-P
Bra012753.1-P
Bra017569.1-P
Bra017658.1-P
Bra020355.1-P
Bra020379.1-P
Bra022023.1-P
Bra024021.1-P
Bra024202.1-P
Bra025031.1-P
Bra027422.1-P
Bra032850.1-P
Bra033505.1-P
Bra033995.1-P
Bra034178.1-P
Bra034628.1-P
Bra035162.1-P
Bra039002.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G05420.1	Bra032850.1-P	AT1G19750.1	20622147
AT4G05420.1	Bra004232.1-P	AT1G65030.1	18223036
AT4G05420.1	Bra033995.1-P	AT1G65030.1	18223036
AT4G05420.1	Bra003577.1-P	AT1G80670.1	18223036
AT4G05420.1	Bra008447.1-P	AT1G80670.1	18223036
AT4G05420.1	Bra035162.1-P	AT1G80670.1	18223036
AT4G05420.1	Bra039002.1-P	AT2G19430.1	18223036
AT4G05420.1	Bra027422.1-P	AT3G13550.1	16844902
AT4G05420.1	Bra000849.1-P	AT4G03020.1	21798944
AT4G05420.1	Bra034178.1-P	AT4G03020.1	21798944
AT4G05420.1	Bra000702.1-P	AT4G10180.1	16792691
AT4G05420.1	Bra033505.1-P	AT4G15730.1	21798944
AT4G05420.1	Bra012753.1-P	AT4G15900.1	18223036
AT4G05420.1	Bra024202.1-P	AT4G28450.1	18223036
AT4G05420.1	Bra011139.1-P	AT4G29830.1	18223036
AT4G05420.1	Bra010248.1-P	AT4G31160.1	18552200
AT4G05420.1	Bra024021.1-P	AT4G31160.1	18552200
AT4G05420.1	Bra011536.1-P	AT4G34460.1	18223036
AT4G05420.1	Bra017658.1-P	AT4G34460.1	18223036
AT4G05420.1	Bra034628.1-P	AT4G34460.1	18223036
AT4G05420.1	Bra017569.1-P	AT5G46210.1	16792691
AT4G05420.1	Bra022023.1-P	AT5G46210.1	16792691
AT4G05420.1	Bra025031.1-P	AT5G46210.1	16792691
AT4G05420.1	Bra017569.1-P	AT5G46210.1	16844902
AT4G05420.1	Bra022023.1-P	AT5G46210.1	16844902
AT4G05420.1	Bra025031.1-P	AT5G46210.1	16844902
AT4G05420.1	Bra017569.1-P	AT5G46210.1	18223036
AT4G05420.1	Bra022023.1-P	AT5G46210.1	18223036
AT4G05420.1	Bra025031.1-P	AT5G46210.1	18223036
AT4G05420.1	Bra017569.1-P	AT5G46210.1	18551167
AT4G05420.1	Bra022023.1-P	AT5G46210.1	18551167
AT4G05420.1	Bra025031.1-P	AT5G46210.1	18551167
AT4G05420.1	Bra002667.1-P	AT5G58230.1	21240189
AT4G05420.1	Bra020379.1-P	AT5G58230.1	21240189
AT4G05420.1	Bra020355.1-P	AT5G58760.1	16792691
AT4G05420.1	Bra020355.1-P	AT5G58760.1	18551167
AT4G05420.1	Bra020355.1-P	AT5G58760.1	21240189

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68484	Canola	cytosol, endoplasmic reticulum, vacuole	49.26	100.0
CDY70585	Canola	plastid	32.69	100.0
CDY69266	Canola	nucleus	50.28	99.64
AT4G05420.1	Thale cress	cytosol, nucleus, peroxisome	96.78	96.6
CDY69930	Canola	plastid	41.07	95.1
KRH59213	Soybean	cytosol, plasma membrane, plastid	41.8	90.8
VIT_10s0003g04360.t01	Wine grape	cytosol, nucleus, plasma membrane	89.96	89.72
KRH43086	Soybean	nucleus	16.76	89.66
Solyc02g021650.2.1	Tomato	nucleus	88.58	87.85
KRH25071	Soybean	nucleus	47.79	86.93
GSMUA_Achr8P07200_001	Banana	cytosol, nucleus, plasma membrane	85.64	85.4
KRH59212	Soybean	cytosol, nucleus	41.8	85.18
KXG22678	Sorghum	nucleus	82.04	81.82
Zm00001d039165_P046	Maize	nucleus	81.77	81.24
TraesCS1B01G473400.1	Wheat	nucleus	81.22	80.92
TraesCSU01G002300.1	Wheat	golgi, plastid	81.22	80.92
TraesCS1D01G445700.1	Wheat	unclear	81.12	80.83
Zm00001d009745_P023	Maize	cytosol, nucleus, plasma membrane, plastid	78.08	77.16
HORVU1Hr1G094530.1	Barley	nucleus, plastid	80.94	76.84
Bra020884.1-P	Field mustard	cytosol	89.13	75.51
TraesCS3A01G210100.2	Wheat	nucleus	66.21	66.15
TraesCS3B01G240600.1	Wheat	cytosol	62.34	65.47
HORVU3Hr1G050820.11	Barley	plastid	66.02	63.34
HORVU7Hr1G056620.1	Barley	cytosol	6.81	63.25
HORVU7Hr1G056610.1	Barley	cytosol	9.58	52.26
PGSC0003DMT400009595	Potato	nucleus	11.05	45.98
Bra034172.1-P	Field mustard	nucleus, plastid, vacuole	22.93	20.51
Bra001431.1-P	Field mustard	nucleus, plastid	18.05	14.62
Bra034797.1-P	Field mustard	nucleus	17.13	12.81

Protein Annotations

MapMan:14.6.1.3.1	MapMan:19.2.2.8.3.2	Gene3D:2.130.10.10	MapMan:26.1.1.3.2	Gene3D:3.30.980.30	EnsemblPlantsGene:Bra029577
EnsemblPlants:Bra029577.1	EnsemblPlants:Bra029577.1-P	InterPro:Cleavage/polyA-sp_fac_asu_C	ncoils:Coil	InterPro:DDB1	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0080008	InterPro:IPR015943
UniProt:M4ELA9	PFAM:PF03178	PFAM:PF10433	PANTHER:PTHR10644	PANTHER:PTHR10644:SF3	SUPFAM:SSF50978
UniParc:UPI00025425A6	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:

Description

AT4G05420 (E=0.0) DDB1A | DDB1A (DAMAGED DNA BINDING PROTEIN 1A); DNA binding / protein binding

Coordinates

chrA09:-:16915602..16921329

Molecular Weight (calculated)

121092.0 Da

IEP (calculated)

4.887

GRAVY (calculated)

-0.101

Length

1086 amino acids

Sequence
(BLAST)

0001: MSSWNYVVTA HKPTSVTHSC VGNFTSPQEL NLIVAKCTRI EIHLLTPQGL QPMLDVPIYG RIATLELFRP HGETQDFLFI VTERHKFCVL QWDAESSELV
0101: TRAMGDVSDR IGRPTDNGQI GIIDPDCRLI GLHLYDGLFK VIPFDNKGQL KEAFNIRLEE LQVLDIKFLF GCAKPTIAVL YQDNKDARHV KTYEVSLKDK
0201: DFVEGPWSQN NLDNGADLLI PVPPPLCGVL IIGEETIVYC SANAFKAIPI RPSITKAYGR VDVDGSRYLL GDHAGLVHLL VITHEKEKVT GLKIELLGET
0301: SIASTISYLD NAVVFVGSSY GDSQLVKLNL HPDAKGSYVE VLERYTNLGP IVDFCVVDLE RQGQGQVVTC SGAFKDGSLR IVRNGIGINE QASVELEGIK
0401: GMWSLKSSVD EAFDTFLVVS FISETRILAM NLEDELEETE IEGFLSQLQT LFCHDAVYNQ LVTSNSVRLV SSTTRELRDE WHAPAGFTVN VATANASQVL
0501: LATGGGHLVY LEIGDGKLTE VQHTVLEYEV SCLDINPIGD NPNYSQLASV GMWTDISVRI FSLPELTLIT KEQLGGEIIP RSVLLCSFEG ISYLLCALGD
0601: GHLLNFQLDT TTGQLKDRKK VSLGTQPITL RTFSSKSATH VFAASDRPTV IYSSNKKLLY SNVNLKEVSY MCPFNSAAFP DSLAIAREGE LTIGTIDDIQ
0701: KLHIRTIPLG EHARRICHQE QTRTFGICSL GNQTNAEESE MHFVRLLDDQ SFEFMSTYPL DAFEYACSIL SCSFTDDKNV YYCVGTAYVL PEENEPTKGR
0801: ILVFIVEDAK LQLIAEKETK GAVYSLNAFN GKLLAAINQK IQLYKWMLRD DGTRELQSEC GHHGHILALY VQTRGDFIVV GDLMKSISLL IYKHEEGAIE
0901: ERARDYNANW MSAVEILDDD TYLGAENNFN LLTVKKNSEG ATDEERGRLE VVGEYHLGEF VNRFCHGSLV MRLPDSEIGQ IPTVIFGTVN GMIGVIASLP
1001: QEQYAFLEKL QSSLRKVIKG VGGLSHEQWR SFNNEKRTVE ARNFLDGDLI ESFLDLSRNK MEEISKSMNV QVEELCKRVE ELTRLH

Best Arabidopsis Sequence Match ( AT4G05420.1 )
(BLAST)

0001: MSSWNYVVTA HKPTSVTHSC VGNFTSPQEL NLIVAKCTRI EIHLLTPQGL QPMLDVPIYG RIATLELFRP HGEAQDFLFI ATERYKFCVL QWDPESSELI
0101: TRAMGDVSDR IGRPTDNGQI GIIDPDCRLI GLHLYDGLFK VIPFDNKGQL KEAFNIRLEE LQVLDIKFLF GCAKPTIAVL YQDNKDARHV KTYEVSLKDK
0201: DFVEGPWSQN SLDNGADLLI PVPPPLCGVL IIGEETIVYC SASAFKAIPI RPSITKAYGR VDVDGSRYLL GDHAGMIHLL VITHEKEKVT GLKIELLGET
0301: SIASTISYLD NAVVFVGSSY GDSQLVKLNL HPDAKGSYVE VLERYINLGP IVDFCVVDLE RQGQGQVVTC SGAFKDGSLR VVRNGIGINE QASVELQGIK
0401: GMWSLKSSID EAFDTFLVVS FISETRILAM NLEDELEETE IEGFLSQVQT LFCHDAVYNQ LVQVTSNSVR LVSSTTRELR DEWHAPAGFT VNVATANASQ
0501: VLLATGGGHL VYLEIGDGKL TEVQHALLEY EVSCLDINPI GDNPNYSQLA AVGMWTDISV RIFSLPELTL ITKEQLGGEI IPRSVLLCAF EGISYLLCAL
0601: GDGHLLNFQM DTTTGQLKDR KKVSLGTQPI TLRTFSSKSA THVFAASDRP TVIYSSNKKL LYSNVNLKEV SHMCPFNSAA FPDSLAIARE GELTIGTIDD
0701: IQKLHIRTIP LGEHARRICH QEQTRTFGIC SLGNQSNSEE SEMHFVRLLD DQTFEFMSTY PLDSFEYGCS ILSCSFTEDK NVYYCVGTAY VLPEENEPTK
0801: GRILVFIVED GRLQLIAEKE TKGAVYSLNA FNGKLLAAIN QKIQLYKWML RDDGTRELQS ECGHHGHILA LYVQTRGDFI VVGDLMKSIS LLLYKHEEGA
0901: IEERARDYNA NWMSAVEILD DDIYLGAENN FNLLTVKKNS EGATDEERGR LEVVGEYHLG EFVNRFRHGS LVMRLPDSEI GQIPTVIFGT VNGVIGVIAS
1001: LPQEQYTFLE KLQSSLRKVI KGVGGLSHEQ WRSFNNEKRT AEARNFLDGD LIESFLDLSR NKMEDISKSM NVQVEELCKR VEELTRLH

Arabidopsis Description

DDB1ADDB1A [Source:UniProtKB/TrEMBL;Acc:A0A178UYD4]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.