Factsheet for Bra017658.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 2
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001894.1-P
Bra009004.1-P
Bra023782.1-P
Bra029577.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34460.1	Bra001894.1-P	AT3G22942.1	11513956
AT4G34460.1	Bra023782.1-P	AT3G22942.1	11513956
AT4G34460.1	Bra029577.1-P	AT4G05420.1	18223036
AT4G34460.1	Bra009004.1-P	AT5G10920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra011536.1-P	Field mustard	cytosol	95.24	95.49
AT4G34460.1	Thale cress	cytosol	92.59	92.84
Bra034628.1-P	Field mustard	cytosol	92.06	92.06
VIT_03s0063g02480.t01	Wine grape	cytosol	81.48	81.7
KRH29472	Soybean	cytosol	80.42	80.64
KRH24483	Soybean	cytosol	80.16	80.37
PGSC0003DMT400001906	Potato	cytosol	79.89	80.11
Solyc01g109560.2.1	Tomato	cytosol	79.63	79.84
KRH60850	Soybean	cytosol	79.1	79.31
KRH51535	Soybean	cytosol	78.57	78.78
GSMUA_Achr10P...	Banana	cytosol	76.19	75.99
EER93689	Sorghum	cytosol, plastid	76.19	75.79
GSMUA_Achr6P31660_001	Banana	cytosol	75.66	75.46
TraesCS4A01G294000.1	Wheat	cytosol, plastid	75.66	75.26
Os03t0669200-01	Rice	plasma membrane	75.4	75.0
TraesCS4B01G019900.1	Wheat	cytosol, plastid	75.4	75.0
TraesCS4D01G017800.1	Wheat	cytosol, plastid	75.4	75.0
Zm00001d033422_P001	Maize	extracellular, mitochondrion, plasma membrane	75.4	75.0
GSMUA_Achr9P09850_001	Banana	cytosol	74.87	74.67
HORVU4Hr1G003110.2	Barley	cytosol	75.13	63.82
CDY45313	Canola	endoplasmic reticulum, extracellular, vacuole	99.47	42.15

Protein Annotations

Gene3D:2.130.10.10	MapMan:26.8.1.1.2.2	MapMan:27.6.2.2	EnsemblPlantsGene:Bra017658	EnsemblPlants:Bra017658.1	EnsemblPlants:Bra017658.1-P
ncoils:Coil	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	InterPro:Gprotein_B	InterPro:Guanine_nucleotide-bd_bsu	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	UniProt:M4DMC5	PFAM:PF00400	PIRSF:PIRSF002394	PRINTS:PR00319
PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19850	PANTHER:PTHR19850:SF48
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000254127A	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

AT4G34460 (E=1e-193) AGB1, ELK4, ATAGB1 | AGB1 (GTP BINDING PROTEIN BETA 1); GTPase/ nucleotide binding / protein binding

Coordinates

chrA03:-:29562378..29564267

Molecular Weight (calculated)

40960.9 Da

IEP (calculated)

7.069

GRAVY (calculated)

-0.223

Length

378 amino acids

Sequence
(BLAST)

001: MSVSELKERH AVATETVNNL RDRLRQRRLQ LLDTDVSKYS AAQGRSPVKF GATDLVCCRT LLGHTGKVYS LDWTPERNRI VSASQDGRLI VWNALTSQKT
101: HAIKLPCAWV MTCAFSPNGQ TVACGGLDSV CSIFSLSSTA DKDGTVPVSR TLSGHRGYVS CCQYVPNEDA HLITSSGDQT CVLWDVTTGL KTSVFGGEFQ
201: SGHTGDVLSV SISGSNPNWF ISGSCDTSAC LWDTRAASRA VRTFHGHEGD VNTVKFFPDG YRFGTGSDDG TCRLYDLRTG HQLQVYHQAN GDGENLPVTS
301: IAFSASGRLL FAGYANNSTC YVWDTLLGEV VLDLGELQDS HKNRISCLGM SADGSALCTG SWDSNLKIWA FGGHRRVT

Best Arabidopsis Sequence Match ( AT4G34460.1 )
(BLAST)

001: MSVSELKERH AVATETVNNL RDQLRQRRLQ LLDTDVARYS AAQGRTRVSF GATDLVCCRT LQGHTGKVYS LDWTPERNRI VSASQDGRLI VWNALTSQKT
101: HAIKLPCAWV MTCAFSPNGQ SVACGGLDSV CSIFSLSSTA DKDGTVPVSR MLTGHRGYVS CCQYVPNEDA HLITSSGDQT CILWDVTTGL KTSVFGGEFQ
201: SGHTADVLSV SISGSNPNWF ISGSCDSTAR LWDTRAASRA VRTFHGHEGD VNTVKFFPDG YRFGTGSDDG TCRLYDIRTG HQLQVYQPHG DGENGPVTSI
301: AFSVSGRLLF AGYASNNTCY VWDTLLGEVV LDLGLQQDSH RNRISCLGLS ADGSALCTGS WDSNLKIWAF GGHRRVI

Arabidopsis Description

GB1ELK4 [Source:UniProtKB/TrEMBL;Acc:A0A178V0Y1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.