CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
cytosol 2
endoplasmic reticulum 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER94983
KXG22678

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34460.1	KXG22678	AT4G05420.1	18223036
AT4G34460.1	EER94983	AT5G10920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d033422_P001	Maize	extracellular, mitochondrion, plasma membrane	98.42	98.42
Os03t0669200-01	Rice	plasma membrane	95.26	95.26
TraesCS4A01G294000.1	Wheat	cytosol, plastid	93.68	93.68
TraesCS4D01G017800.1	Wheat	cytosol, plastid	93.42	93.42
TraesCS4B01G019900.1	Wheat	cytosol, plastid	93.42	93.42
GSMUA_Achr6P31660_001	Banana	cytosol	85.53	85.75
GSMUA_Achr9P09850_001	Banana	cytosol	83.68	83.91
GSMUA_Achr10P...	Banana	cytosol	82.89	83.11
VIT_03s0063g02480.t01	Wine grape	cytosol	79.74	80.37
HORVU4Hr1G003110.2	Barley	cytosol	93.68	80.0
PGSC0003DMT400001906	Potato	cytosol	78.95	79.58
Solyc01g109560.2.1	Tomato	cytosol	78.68	79.31
KRH60850	Soybean	cytosol	78.42	79.05
KRH51535	Soybean	cytosol	78.16	78.78
KRH24483	Soybean	cytosol	77.37	77.98
KRH29472	Soybean	cytosol	77.37	77.98
CDX75436	Canola	cytosol	77.37	77.98
CDX69061	Canola	cytosol	77.37	77.98
Bra011536.1-P	Field mustard	cytosol	77.11	77.72
AT4G34460.1	Thale cress	cytosol	76.58	77.19
Bra017658.1-P	Field mustard	cytosol	75.79	76.19
Bra034628.1-P	Field mustard	cytosol	75.26	75.66
CDY46247	Canola	cytosol	68.68	75.0
CDX76284	Canola	cytosol	67.37	74.42
CDX72483	Canola	vacuole	76.32	32.77
CDY45313	Canola	endoplasmic reticulum, extracellular, vacuole	76.05	32.4

Protein Annotations

Gene3D:2.130.10.10	MapMan:26.8.1.1.2.2	MapMan:27.6.2.2	EntrezGene:8054193	UniProt:C5WQA4	ncoils:Coil
EnsemblPlants:EER93689	ProteinID:EER93689	ProteinID:EER93689.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0000003	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005783	GO:GO:0005834	GO:GO:0005886	GO:GO:0006950	GO:GO:0007154	GO:GO:0007165
GO:GO:0007186	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009605	GO:GO:0009607
GO:GO:0009653	GO:GO:0009719	GO:GO:0009723	GO:GO:0009788	GO:GO:0009791	GO:GO:0009817
GO:GO:0009845	GO:GO:0009867	GO:GO:0009987	GO:GO:0009991	GO:GO:0010118	GO:GO:0010154
GO:GO:0016020	GO:GO:0030968	GO:GO:0048364	GO:GO:0048527	GO:GO:0050832	GO:GO:0072593
GO:GO:0080008	GO:GO:1905392	GO:GO:2000280	InterPro:Gprotein_B	InterPro:Guanine_nucleotide-bd_bsu	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PIRSF:PIRSF002394	PRINTS:PR00319	PRINTS:PR00320
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19850	PANTHER:PTHR19850:SF48	SMART:SM00320
EnsemblPlantsGene:SORBI_3001G142100	SUPFAM:SSF50978	unigene:Sbi.12680	UniParc:UPI0001A82A23	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_002466691.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:-:11404334..11410737

Molecular Weight (calculated)

41702.0 Da

IEP (calculated)

7.464

GRAVY (calculated)

-0.294

Length

380 amino acids

Sequence
(BLAST)

001: MASVAELKEK HAAATASVNS LRERLRQRRE TLLDTDVARY SKSQGRLPVS FNPTDLVCCR TLQGHSGKVY SLDWTPEKNW IVSASQDGRL IVWNALTSQK
101: THAIKLHCPW VMTCAFAPNG QSVACGGLDS ACSIFNLNSQ ADRDGNMPVS RILTGHKGYV SSCQYVPDQE TRLITSSGDQ TCVLWDVTTG QRISIFGGEF
201: PSGHTADVQS VSINSSNTNM FVSGSCDTTV RLWDIRIASR AVRTYHGHEG DVNSVKFFPD GHRFGTGSDD GTCRLFDMRT GHQLQVYSRV PDRNDDELPT
301: VTSIAFSISG RLLFAGYSNG DCYVWDTLLA EVVLNLGNLQ NSHDGRISCL GMSSDGSALC TGSWDKNLKI WAFSGHRKIV

Best Arabidopsis Sequence Match ( AT4G34460.1 )
(BLAST)

001: MSVSELKERH AVATETVNNL RDQLRQRRLQ LLDTDVARYS AAQGRTRVSF GATDLVCCRT LQGHTGKVYS LDWTPERNRI VSASQDGRLI VWNALTSQKT
101: HAIKLPCAWV MTCAFSPNGQ SVACGGLDSV CSIFSLSSTA DKDGTVPVSR MLTGHRGYVS CCQYVPNEDA HLITSSGDQT CILWDVTTGL KTSVFGGEFQ
201: SGHTADVLSV SISGSNPNWF ISGSCDSTAR LWDTRAASRA VRTFHGHEGD VNTVKFFPDG YRFGTGSDDG TCRLYDIRTG HQLQVYQPHG DGENGPVTSI
301: AFSVSGRLLF AGYASNNTCY VWDTLLGEVV LDLGLQQDSH RNRISCLGLS ADGSALCTGS WDSNLKIWAF GGHRRVI

Arabidopsis Description

GB1ELK4 [Source:UniProtKB/TrEMBL;Acc:A0A178V0Y1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.