CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER94983

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G10920.1	EER94983	AT5G10920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G186300.1	Wheat	plastid	88.18	88.18
TraesCS4A01G119700.1	Wheat	plastid	87.98	87.98
GSMUA_Achr11P...	Banana	cytosol	70.93	75.78
VIT_18s0001g07590.t01	Wine grape	cytosol	68.8	74.27
CDY69492	Canola	cytosol, peroxisome	33.33	71.97
KRH62224	Soybean	plastid	70.16	70.7
KRH52951	Soybean	plastid	69.77	69.77
Solyc04g076320.2.1	Tomato	plastid	69.96	68.76
CDX69799	Canola	plastid	64.34	67.07
CDX97066	Canola	plastid	67.44	67.05
AT5G10920.1	Thale cress	plastid	66.86	66.73
PGSC0003DMT400024170	Potato	plastid	69.77	66.67
CDY14477	Canola	plastid	57.75	63.81
Os03t0305500-02	Rice	plastid	81.59	56.06
HORVU4Hr1G054060.3	Barley	plastid	79.84	55.83
TraesCS4B01G185000.1	Wheat	plastid	79.07	54.99
Zm00001d047667_P001	Maize	plastid	92.83	54.43
CDY69491	Canola	cytosol	13.57	46.67
Bra009004.1-P	Field mustard	mitochondrion, plastid	66.67	36.6

Protein Annotations

KEGG:00220+4.3.2.1	KEGG:00250+4.3.2.1	Gene3D:1.10.275.10	Gene3D:1.10.40.30	Gene3D:1.20.200.10	MapMan:4.1.1.1.2.4
EntrezGene:8081084	InterPro:Arg_succ_lyase_C	InterPro:Argininosuccinate_lyase	UniProt:C5WMI0	EnsemblPlants:EER94983	ProteinID:EER94983
ProteinID:EER94983.1	InterPro:Fumarase/histidase_N	InterPro:Fumarate_lyase_CS	InterPro:Fumarate_lyase_N	InterPro:Fumarate_lyase_fam	GO:GO:0003674
GO:GO:0003824	GO:GO:0004056	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0042450	InterPro:IPR024083
InterPro:L-Aspartase-like	HAMAP:MF_00006	PFAM:PF00206	PFAM:PF14698	PRINTS:PR00145	PRINTS:PR00149
ScanProsite:PS00163	PANTHER:PTHR43814	MetaCyc:PWY-4983	MetaCyc:PWY-4984	MetaCyc:PWY-5	MetaCyc:PWY-5154
MetaCyc:PWY-7400	EnsemblPlantsGene:SORBI_3001G397000	SUPFAM:SSF48557	unigene:Sbi.6257	TIGRFAMs:TIGR00838	UniParc:UPI0001A82F4F
RefSeq:XP_002467985.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:68238095..68242359

Molecular Weight (calculated)

57558.2 Da

IEP (calculated)

6.093

GRAVY (calculated)

-0.174

Length

516 amino acids

Sequence
(BLAST)

001: MAFTSQSLIF RAAASPPCPR IAPSPGRVTL RDHRAAFPPL AAASTSMASS ESEDKREAKL WGGRFEEGVT DAVERFTESI SYDWQLYKYD IMGSKAHASM
101: LAGQGLITAT DRDIILEGLD QIERLIQEGK FEWRKDREDV HMNIEAALIE RVGEPAKKLH TARSRNDQIV TDLRLWCRDA IDKILIRIKQ LQVSLVILAS
201: KYVDLIVPGY THLQRAQPVL LPHLLLSYVE QLERDAGRLV NCRERVNFCP LGACALAGTG LPIDRFQTAK DLKFTAPMKN SIDAVSDRDF VLEFLAANSI
301: AAVHLSRIGE EWVLWASEEF GFLTPSDKVS TGSSIMPQKK NPDPMELVRG KSARVVGDLM TVLTLCKGLP QAYNRDLQED KEPLFDSVKA VLGMLEVCTE
401: FAQNISFNSK RIQSSLPAGY LDATTLADYL VKKGIPFRTS HEIVGRSVAL CVYKQCQLAE LELDDLKSVH PVFEGDVYEY LGVENAVNKF ISYGSTGSEQ
501: VKKQLEDWRI QLGISS

Best Arabidopsis Sequence Match ( AT5G10920.1 )
(BLAST)

001: MGAIDLSFSQ SLLFSSSRSN LSSSTHRSVS FLPPGSKSRC LPPLRSMSHD DDTASKEVKL WGGRFEESVT EKVEKFTESI SFDKVLYKQD IMGSKAHASM
101: LAHQGLITDS DKDSILRGLD DIERQIEANK FEWRTDREDV HMNIEAALTD LIGEPAKKLH TARSRNDQVA TDFRLWCRDA IDTIIVKIRN LQRALVELAL
201: KNEALIVPGY THLQRAQPVL LPHVLLTFVE QLERDAGRYV DCRARLNFSP LGACALAGTG LPIDRFMTAN ALGFTEPMRN SIDAVSDRDF VLEFLYTNAN
301: TGIHLSRLGE EWVLWASEEF GFMTPSDSVS TGSSIMPQKK NPDPMELVRG KSARVIGDLV TVLTLCKGLP LAYNRDFQED KEPMFDSTKT IMGMIDVSAE
401: FAQNVTFNED RIKKSLPAGH LDATTLADYL VKKGMPFRSS HDIVGKLVGV CVSKGCELQN LSLEEMKKLS PVFEEDVFGF LGVENSVNKF SSYGSTGSNC
501: VAEQLGYWVN KLNITST

Arabidopsis Description

Argininosuccinate lyase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LEU8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.