Factsheet for Solyc04g076320.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc04g076320.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G10920.1	Solyc04g076320.2.1	AT5G10920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400024170	Potato	plastid	92.38	89.81
VIT_18s0001g07590.t01	Wine grape	cytosol	74.86	82.22
CDY69492	Canola	cytosol, peroxisome	34.86	76.57
GSMUA_Achr11P...	Banana	cytosol	70.29	76.4
KRH52951	Soybean	plastid	74.1	75.39
KRH62224	Soybean	plastid	72.95	74.8
AT5G10920.1	Thale cress	plastid	72.0	73.11
CDX97066	Canola	plastid	71.81	72.64
CDX69799	Canola	plastid	68.38	72.53
EER94983	Sorghum	plastid	68.76	69.96
TraesCS4D01G186300.1	Wheat	plastid	67.81	68.99
TraesCS4A01G119700.1	Wheat	plastid	67.62	68.8
CDY14477	Canola	plastid	59.05	66.38
CDY69491	Canola	cytosol	16.19	56.67
HORVU4Hr1G054060.3	Barley	plastid	64.0	45.53
Os03t0305500-02	Rice	plastid	63.43	44.34
TraesCS4B01G185000.1	Wheat	plastid	62.67	44.34
Zm00001d047667_P001	Maize	plastid	68.0	40.57
Bra009004.1-P	Field mustard	mitochondrion, plastid	72.0	40.21
TraesCS5D01G307100.1	Wheat	mitochondrion, plastid	19.24	20.45
TraesCS5B01G299700.1	Wheat	plastid	18.67	19.84
HORVU5Hr1G078800.2	Barley	plastid	18.1	19.19

Protein Annotations

KEGG:00220+4.3.2.1	KEGG:00250+4.3.2.1	Gene3D:1.10.275.10	Gene3D:1.10.40.30	Gene3D:1.20.200.10	MapMan:4.1.1.1.2.4
InterPro:Arg_succ_lyase_C	InterPro:Argininosuccinate_lyase	InterPro:Fumarase/histidase_N	InterPro:Fumarate_lyase_CS	InterPro:Fumarate_lyase_N	InterPro:Fumarate_lyase_fam
GO:GO:0003674	GO:GO:0003824	GO:GO:0004056	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016829
GO:GO:0042450	InterPro:IPR024083	UniProt:K4BU70	InterPro:L-Aspartase-like	HAMAP:MF_00006	PFAM:PF00206
PFAM:PF14698	PRINTS:PR00145	PRINTS:PR00149	ScanProsite:PS00163	PANTHER:PTHR43814	SUPFAM:SSF48557
EnsemblPlantsGene:Solyc04g076320.2	EnsemblPlants:Solyc04g076320.2.1	TIGRFAMs:TIGR00838	UniParc:UPI0002765C72	SEG:seg	:

Description

No Description!

Coordinates

chr4:-:61238762..61243048

Molecular Weight (calculated)

58151.5 Da

IEP (calculated)

5.187

GRAVY (calculated)

-0.155

Length

525 amino acids

Sequence
(BLAST)

001: MESLLISSSS SLTTSPIFSS SKHALTPKPQ SLSFNSNARL VLFTCAAQQM NSPPSTAATT AEKEVKLWGG RFEESVTDAV EKFTESISFD KALYKQDIMG
101: SKAHASMLAK QGLMSDIDRD TIIKGLEEIE RQIEAGEFVW RTDREDVHMN IEAALTDLVG EPAKKLHTAR SRNDQVATDF RLWCRDAIDG IISCIKNLQI
201: AMVELALQNE DLIVPGYTHL QRAQPVLLQH LLLAYVEQLE RDAGRLLDCR ARVNFCPLGA CALAGTGLPI DRFMTSDALG FTAPMRNSID AVSDRDFVLE
301: LLSANSITAV HLSRLGEEWV LWASEEFGFL TPSDKVSTGS SIMPQKKNPD PMELVRGKSA RVIGDLVSLL VLCKGLPHAY NRDLQEDKEP VFDSVKAIVG
401: MLEVSAEFAQ NVSFNRERIQ KALPAGHLDA TTLADYLVKK GIPFRTSHDI VGRSVALCVS RNCELQDLSL DELNSLHPIF DKDVYEYLGV ENSIKKFRSY
501: GSTGSECVAG QLDYWIDKLS ISRER

Best Arabidopsis Sequence Match ( AT5G10920.1 )
(BLAST)

001: MGAIDLSFSQ SLLFSSSRSN LSSSTHRSVS FLPPGSKSRC LPPLRSMSHD DDTASKEVKL WGGRFEESVT EKVEKFTESI SFDKVLYKQD IMGSKAHASM
101: LAHQGLITDS DKDSILRGLD DIERQIEANK FEWRTDREDV HMNIEAALTD LIGEPAKKLH TARSRNDQVA TDFRLWCRDA IDTIIVKIRN LQRALVELAL
201: KNEALIVPGY THLQRAQPVL LPHVLLTFVE QLERDAGRYV DCRARLNFSP LGACALAGTG LPIDRFMTAN ALGFTEPMRN SIDAVSDRDF VLEFLYTNAN
301: TGIHLSRLGE EWVLWASEEF GFMTPSDSVS TGSSIMPQKK NPDPMELVRG KSARVIGDLV TVLTLCKGLP LAYNRDFQED KEPMFDSTKT IMGMIDVSAE
401: FAQNVTFNED RIKKSLPAGH LDATTLADYL VKKGMPFRSS HDIVGKLVGV CVSKGCELQN LSLEEMKKLS PVFEEDVFGF LGVENSVNKF SSYGSTGSNC
501: VAEQLGYWVN KLNITST

Arabidopsis Description

Argininosuccinate lyase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LEU8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.