Factsheet for TraesCS4D01G186300.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	mitochondrion

plastid: 16481623
plastid: 16595579
plastid: 18419817
golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 18419817 doi

FM Dupont

Western Regional Research Center, United States Department of Agriculture, Agricultural Research Service, 800 Buchanan Street, Albany, CA 94710K, USA.

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

msms PMID: 16481623 doi

Y Balmer, WH Vensel, N Cai, W Manieri, P Schürmann, WJ Hurkman, BB Buchanan

Department of Plant and Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G119700.1
TraesCS4B01G185000.1
TraesCS4D01G186300.1
TraesCS5B01G299700.1
TraesCS5D01G307100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G10920.1	TraesCS4A01G119700.1	AT5G10920.1	21798944
AT5G10920.1	TraesCS4B01G185000.1	AT5G10920.1	21798944
AT5G10920.1	TraesCS4D01G186300.1	AT5G10920.1	21798944
AT5G10920.1	TraesCS5B01G299700.1	AT5G10920.1	21798944
AT5G10920.1	TraesCS5D01G307100.1	AT5G10920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G119700.1	Wheat	plastid	99.22	99.22
EER94983	Sorghum	plastid	88.18	88.18
GSMUA_Achr11P...	Banana	cytosol	70.54	75.36
VIT_18s0001g07590.t01	Wine grape	cytosol	69.19	74.69
CDY69492	Canola	cytosol, peroxisome	33.33	71.97
KRH62224	Soybean	plastid	69.19	69.73
KRH52951	Soybean	plastid	69.38	69.38
Solyc04g076320.2.1	Tomato	plastid	68.99	67.81
CDX69799	Canola	plastid	64.92	67.68
CDX97066	Canola	plastid	67.64	67.24
AT5G10920.1	Thale cress	plastid	66.86	66.73
PGSC0003DMT400024170	Potato	plastid	68.6	65.56
CDY14477	Canola	plastid	57.36	63.38
HORVU4Hr1G054060.3	Barley	plastid	84.88	59.35
TraesCS4B01G185000.1	Wheat	plastid	84.69	58.89
Os03t0305500-02	Rice	plastid	80.43	55.26
Zm00001d047667_P001	Maize	plastid	86.43	50.68
CDY69491	Canola	cytosol	13.76	47.33
Bra009004.1-P	Field mustard	mitochondrion, plastid	66.86	36.7
TraesCS5D01G307100.1	Wheat	mitochondrion, plastid	18.8	19.64

Protein Annotations

KEGG:00220+4.3.2.1	KEGG:00250+4.3.2.1	Gene3D:1.10.275.10	Gene3D:1.10.40.30	Gene3D:1.20.200.10	MapMan:4.1.1.1.2.4
InterPro:Arg_succ_lyase_C	InterPro:Argininosuccinate_lyase	InterPro:Fumarase/histidase_N	InterPro:Fumarate_lyase_CS	InterPro:Fumarate_lyase_N	InterPro:Fumarate_lyase_fam
GO:GO:0003674	GO:GO:0003824	GO:GO:0004056	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0042450	InterPro:IPR024083	InterPro:L-Aspartase-like	HAMAP:MF_00006	PFAM:PF00206
PFAM:PF14698	PRINTS:PR00145	PRINTS:PR00149	ScanProsite:PS00163	PANTHER:PTHR43814	SUPFAM:SSF48557
TIGRFAMs:TIGR00838	EnsemblPlantsGene:TraesCS4D01G186300	EnsemblPlants:TraesCS4D01G186300.1	TIGR:cd01359	SEG:seg	:

Description

No Description!

Coordinates

chr4D:-:323928161..323933065

Molecular Weight (calculated)

57266.9 Da

IEP (calculated)

6.267

GRAVY (calculated)

-0.142

Length

516 amino acids

Sequence
(BLAST)

001: MAATSHSLLS PAPTSLPRAR LAFPAVSAVA PRRRPSFPAV AAAASSMASS EAEEKKETKL WGGRFEEGVT DAVERFTESI SYDWQLYKYD IMGSKAHASM
101: LAAQGLITTG DRDIILEGLD QIEKQIQDGK FEWRKDREDV HMNIEAALIE KVGEPAKKLH TARSRNDQIV TDLRLWCRDA IDKILIRIKQ FQVSLVLLAS
201: KYVDLIVPGY THLQRAQPVL LPHLLLSYVE QLERDAGRLI DCRERVNFCP LGACALAGTG LPIDRFKTAK DLKFTAPMKN SIDAVSDRDF VLEFLAANSI
301: AAIHLSRIGE EWVLWASEEF GFLTPSDSVS TGSSIMPQKK NPDPMELVRG KSARVVGDLM TVLVLCKGLP QAYNRDLQED KEPLFDSVKA ILGMLEVCSE
401: FAQNISFNSK RIQSSLPAGY LDATTLADYL VKKGVPFRTS HEIVGRCVAL CVSKNCQLTE LEMDDLKAVH PVFEADVYAY LGVENAVNKF ISYGSTGSEQ
501: VKKQLEDWRV QLGINP

Best Arabidopsis Sequence Match ( AT5G10920.1 )
(BLAST)

001: MGAIDLSFSQ SLLFSSSRSN LSSSTHRSVS FLPPGSKSRC LPPLRSMSHD DDTASKEVKL WGGRFEESVT EKVEKFTESI SFDKVLYKQD IMGSKAHASM
101: LAHQGLITDS DKDSILRGLD DIERQIEANK FEWRTDREDV HMNIEAALTD LIGEPAKKLH TARSRNDQVA TDFRLWCRDA IDTIIVKIRN LQRALVELAL
201: KNEALIVPGY THLQRAQPVL LPHVLLTFVE QLERDAGRYV DCRARLNFSP LGACALAGTG LPIDRFMTAN ALGFTEPMRN SIDAVSDRDF VLEFLYTNAN
301: TGIHLSRLGE EWVLWASEEF GFMTPSDSVS TGSSIMPQKK NPDPMELVRG KSARVIGDLV TVLTLCKGLP LAYNRDFQED KEPMFDSTKT IMGMIDVSAE
401: FAQNVTFNED RIKKSLPAGH LDATTLADYL VKKGMPFRSS HDIVGKLVGV CVSKGCELQN LSLEEMKKLS PVFEEDVFGF LGVENSVNKF SSYGSTGSNC
501: VAEQLGYWVN KLNITST

Arabidopsis Description

Argininosuccinate lyase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LEU8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.