CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol

Predictor Summary:

nucleus 1
peroxisome 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome
Any Predictor:	cytosol, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	peroxisome
PProwler:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69799
CDX97066
CDY14477
CDY69491
CDY69492

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G10920.1	CDX69799	AT5G10920.1	21798944
AT5G10920.1	CDX97066	AT5G10920.1	21798944
AT5G10920.1	CDY14477	AT5G10920.1	21798944
AT5G10920.1	CDY69491	AT5G10920.1	21798944
AT5G10920.1	CDY69492	AT5G10920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69799	Canola	plastid	84.1	40.61
CDX97066	Canola	plastid	87.45	40.27
AT5G10920.1	Thale cress	plastid	82.43	38.1
VIT_18s0001g07590.t01	Wine grape	cytosol	75.31	37.66
GSMUA_Achr11P...	Banana	cytosol	74.48	36.85
CDY14477	Canola	plastid	71.97	36.83
KRH62224	Soybean	plastid	77.41	36.13
KRH52951	Soybean	plastid	76.99	35.66
Solyc04g076320.2.1	Tomato	plastid	76.57	34.86
PGSC0003DMT400024170	Potato	plastid	75.73	33.52
EER94983	Sorghum	plastid	71.97	33.33
TraesCS4A01G119700.1	Wheat	plastid	71.97	33.33
TraesCS4D01G186300.1	Wheat	plastid	71.97	33.33
HORVU4Hr1G054060.3	Barley	plastid	64.85	21.0
TraesCS4B01G185000.1	Wheat	plastid	64.02	20.62
Os03t0305500-02	Rice	plastid	63.6	20.24
Zm00001d047667_P001	Maize	plastid	71.55	19.43
TraesCS5B01G299700.1	Wheat	plastid	20.5	9.92
TraesCS5D01G307100.1	Wheat	mitochondrion, plastid	20.08	9.72
HORVU5Hr1G078800.2	Barley	plastid	19.67	9.49
CDY69491	Canola	cytosol	0.0	0.0

Protein Annotations

KEGG:00220+4.3.2.1	KEGG:00250+4.3.2.1	Gene3D:1.10.275.50	Gene3D:1.20.200.10	MapMan:35.1	GO:A0A078JVE9
UniProt:A0A078JVE9	InterPro:Argininosuccinate_lyase	EnsemblPlants:CDY69492	ProteinID:CDY69492	ProteinID:CDY69492.1	InterPro:Fumarate_lyase_N
GO:GO:0003674	GO:GO:0003824	GO:GO:0004056	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0042450	EnsemblPlantsGene:GSBRNA2T00088173001	InterPro:L-Aspartase-like	PFAM:PF00206	PRINTS:PR00145
PANTHER:PTHR43814	MetaCyc:PWY-4983	MetaCyc:PWY-4984	MetaCyc:PWY-5	MetaCyc:PWY-5154	MetaCyc:PWY-7400
SUPFAM:SSF48557	UniPathway:UPA00068	UniParc:UPI0004EEBBFB	:	:	:

Description

BnaCnng63850DBnaCnng63850D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JVE9]

Coordinates

chrLK039556:-:2607..4105

Molecular Weight (calculated)

27182.3 Da

IEP (calculated)

5.158

GRAVY (calculated)

-0.315

Length

239 amino acids

Sequence
(BLAST)

001: PTGRFEESVT VKVEKFTESI SFDKVLYKQD IMGSKAHATM LAHQGLITDI DRDSILQGLD EIERKIEGDQ FEWRTDRENV HMNIEAALTD LIGEPAKKLH
101: AARSRNDQVA TDFRLWFQLA FNNKDLIVPG YAHLQSAQPV LLQHVLLTYV EQLERDAGRY IDCRERLNFC PLGACALAGT GLPIDRFMTA SALGFTEPMR
201: NSIDAVSDRD FMLEFLYANS NTQPSIYHTS WRRVGTLDL

Best Arabidopsis Sequence Match ( AT5G10920.1 )
(BLAST)

001: MGAIDLSFSQ SLLFSSSRSN LSSSTHRSVS FLPPGSKSRC LPPLRSMSHD DDTASKEVKL WGGRFEESVT EKVEKFTESI SFDKVLYKQD IMGSKAHASM
101: LAHQGLITDS DKDSILRGLD DIERQIEANK FEWRTDREDV HMNIEAALTD LIGEPAKKLH TARSRNDQVA TDFRLWCRDA IDTIIVKIRN LQRALVELAL
201: KNEALIVPGY THLQRAQPVL LPHVLLTFVE QLERDAGRYV DCRARLNFSP LGACALAGTG LPIDRFMTAN ALGFTEPMRN SIDAVSDRDF VLEFLYTNAN
301: TGIHLSRLGE EWVLWASEEF GFMTPSDSVS TGSSIMPQKK NPDPMELVRG KSARVIGDLV TVLTLCKGLP LAYNRDFQED KEPMFDSTKT IMGMIDVSAE
401: FAQNVTFNED RIKKSLPAGH LDATTLADYL VKKGMPFRSS HDIVGKLVGV CVSKGCELQN LSLEEMKKLS PVFEEDVFGF LGVENSVNKF SSYGSTGSNC
501: VAEQLGYWVN KLNITST

Arabidopsis Description

Argininosuccinate lyase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LEU8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.