Factsheet for TraesCS5D01G307100.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 5
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G119700.1
TraesCS4B01G185000.1
TraesCS4D01G186300.1
TraesCS5B01G299700.1
TraesCS5D01G307100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G10920.1	TraesCS4A01G119700.1	AT5G10920.1	21798944
AT5G10920.1	TraesCS4B01G185000.1	AT5G10920.1	21798944
AT5G10920.1	TraesCS4D01G186300.1	AT5G10920.1	21798944
AT5G10920.1	TraesCS5B01G299700.1	AT5G10920.1	21798944
AT5G10920.1	TraesCS5D01G307100.1	AT5G10920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G078800.2	Barley	plastid	36.84	36.77
TraesCS5B01G299700.1	Wheat	plastid	36.23	36.23
GSMUA_Achr11P...	Banana	cytosol	20.45	20.91
VIT_18s0001g07590.t01	Wine grape	cytosol	19.84	20.5
CDY69492	Canola	cytosol, peroxisome	9.72	20.08
Solyc04g076320.2.1	Tomato	plastid	20.45	19.24
KRH52951	Soybean	plastid	19.64	18.8
TraesCS4D01G186300.1	Wheat	plastid	19.64	18.8
PGSC0003DMT400024170	Potato	plastid	20.45	18.7
KRH62224	Soybean	plastid	19.23	18.55
CDX97066	Canola	plastid	19.03	18.11
AT5G10920.1	Thale cress	plastid	18.22	17.41
CDX69799	Canola	plastid	17.21	17.17
CDY14477	Canola	plastid	15.38	16.27
CDY69491	Canola	cytosol	4.25	14.0
Bra009004.1-P	Field mustard	mitochondrion, plastid	20.24	10.64

Protein Annotations

EnsemblPlants:TraesCS5D01G307100.1	EnsemblPlantsGene:TraesCS5D01G307100	Gene3D:1.10.275.50	GO:GO:0003674	GO:GO:0003824	GO:GO:0004056
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0042450	InterPro:Argininosuccinate_lyase
InterPro:L-Aspartase-like	KEGG:00220+4.3.2.1	KEGG:00250+4.3.2.1	PANTHER:PTHR43814	SUPFAM:SSF48557	MapMan:35.1

Description

No Description!

Coordinates

chr5D:+:403625608..403636497

Molecular Weight (calculated)

56250.3 Da

IEP (calculated)

7.976

GRAVY (calculated)

-0.462

Length

494 amino acids

Sequence
(BLAST)

001: MAAFAVKGSL RGPCFSAAGL SSGQNPPRSS AAPLPSMVWS TGSDPRHGKL KAQATEWMRP NDDYRYDVQP SQRHTDFICQ PGPAMHIDLL NRERLRYPML
101: ERKKLVVADQ VKKRPKALQK CARDFADWLL KYICSENENY KYVLVATKEN ANMLMKEGFI SSYARDEILH GLERIKKDIE EGRFQWRDNK DLRTNIIDTL
201: IDIVGGPAKR LDRVISHYVQ LLTVLQLRCH DSIDQVISQT KELQTELFLL AIRNGGLVLP SIWRCANWIL LGDVVLSQLE QLDMDVSQLV SCKNKMDSTL
301: QTALPSDSTY CSMNSLCKDP RHMHNFAVEF GNLIVGDISR DLSNIGLELS SWMELHLLTP NDKVIESFSL MRKQMLDLDN LTATRSAYSI YNPVEDSSRQ
401: FLASFRSVSE ILKAAKEFAK QSSFDHEKAR TFLAPRDNFG ASQLAEFHAT KSLDGQNKDE GGSAIEKQNF RLHSDDTMRK LLDWPRRLQS EKND

Best Arabidopsis Sequence Match ( AT5G10920.1 )
(BLAST)

001: MGAIDLSFSQ SLLFSSSRSN LSSSTHRSVS FLPPGSKSRC LPPLRSMSHD DDTASKEVKL WGGRFEESVT EKVEKFTESI SFDKVLYKQD IMGSKAHASM
101: LAHQGLITDS DKDSILRGLD DIERQIEANK FEWRTDREDV HMNIEAALTD LIGEPAKKLH TARSRNDQVA TDFRLWCRDA IDTIIVKIRN LQRALVELAL
201: KNEALIVPGY THLQRAQPVL LPHVLLTFVE QLERDAGRYV DCRARLNFSP LGACALAGTG LPIDRFMTAN ALGFTEPMRN SIDAVSDRDF VLEFLYTNAN
301: TGIHLSRLGE EWVLWASEEF GFMTPSDSVS TGSSIMPQKK NPDPMELVRG KSARVIGDLV TVLTLCKGLP LAYNRDFQED KEPMFDSTKT IMGMIDVSAE
401: FAQNVTFNED RIKKSLPAGH LDATTLADYL VKKGMPFRSS HDIVGKLVGV CVSKGCELQN LSLEEMKKLS PVFEEDVFGF LGVENSVNKF SSYGSTGSNC
501: VAEQLGYWVN KLNITST

Arabidopsis Description

Argininosuccinate lyase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LEU8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.