Factsheet for PGSC0003DMT400024170

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400024170

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G10920.1	PGSC0003DMT400024170	AT5G10920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g076320.2.1	Tomato	plastid	89.81	92.38
VIT_18s0001g07590.t01	Wine grape	cytosol	73.33	82.85
GSMUA_Achr11P...	Banana	cytosol	69.07	77.23
CDY69492	Canola	cytosol, peroxisome	33.52	75.73
KRH62224	Soybean	plastid	71.67	75.59
KRH52951	Soybean	plastid	71.67	75.0
AT5G10920.1	Thale cress	plastid	69.07	72.15
CDX69799	Canola	plastid	65.93	71.92
CDX97066	Canola	plastid	68.89	71.68
EER94983	Sorghum	plastid	66.67	69.77
TraesCS4D01G186300.1	Wheat	plastid	65.56	68.6
TraesCS4A01G119700.1	Wheat	plastid	65.56	68.6
CDY14477	Canola	plastid	57.22	66.17
CDY69491	Canola	cytosol	15.74	56.67
HORVU4Hr1G054060.3	Barley	plastid	61.3	44.85
TraesCS4B01G185000.1	Wheat	plastid	60.74	44.2
Os03t0305500-02	Rice	plastid	60.93	43.81
Zm00001d047667_P001	Maize	plastid	65.56	40.23
Bra009004.1-P	Field mustard	mitochondrion, plastid	68.89	39.57
TraesCS5D01G307100.1	Wheat	mitochondrion, plastid	18.7	20.45
TraesCS5B01G299700.1	Wheat	plastid	17.96	19.64
HORVU5Hr1G078800.2	Barley	plastid	17.41	18.99

Protein Annotations

KEGG:00220+4.3.2.1	KEGG:00250+4.3.2.1	Gene3D:1.10.275.10	Gene3D:1.10.40.30	Gene3D:1.20.200.10	EntrezGene:102578683
MapMan:4.1.1.1.2.4	InterPro:Arg_succ_lyase_C	InterPro:Argininosuccinate_lyase	InterPro:Fumarase/histidase_N	InterPro:Fumarate_lyase_CS	InterPro:Fumarate_lyase_N
InterPro:Fumarate_lyase_fam	GO:GO:0003674	GO:GO:0003824	GO:GO:0004056	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0042450	InterPro:IPR024083	InterPro:L-Aspartase-like	UniProt:M1AJK6
HAMAP:MF_00006	PFAM:PF00206	PFAM:PF14698	EnsemblPlantsGene:PGSC0003DMG400009343	PGSC:PGSC0003DMG400009343	EnsemblPlants:PGSC0003DMT400024170
PRINTS:PR00145	PRINTS:PR00149	ScanProsite:PS00163	SUPFAM:SSF48557	TIGRFAMs:TIGR00838	UniParc:UPI000295C038
SEG:seg	:	:	:	:	:

Description

Argininosuccinate lyase [Source:PGSC_GENE;Acc:PGSC0003DMG400009343]

Coordinates

chr4:-:64996798..65000774

Molecular Weight (calculated)

60113.9 Da

IEP (calculated)

5.416

GRAVY (calculated)

-0.203

Length

540 amino acids

Sequence
(BLAST)

001: MESLLISSSS SLTTSPIFSS SKHALTPKPQ NLTFNSNARL VLLTCAAQQM NSPPSTAAKE KEVKLWGGRF EESVTDAVEK FTESISFDKA LYKQDIMGSK
101: AHASMLAKQG LMSDSDRDTI IKGLDEIQRQ IEAGEFVWRT DREDVHMNIE AALTDLVGEP AKKLHTARSR NDQVATDFRL WCRDAIDGII SRIKNLQIAM
201: VELALQNEGL IVPGYTHLQR AQPVLLQHLL LAYVEQLERD AGRLLDCRAR VNFCPLGACA LAGTGLPIDR FMTSDALGFT APMRNSIDAV SDRDFVLELL
301: SANSITAVHL SRLGEEWVLW ASEEFGFLTP SDKVSTGSSI MPQKKNPDPM ELVRGKSARV IGDLVSLLVL CKGLPHAYNR DLQEDKEPVF DSVKAIVGML
401: EVSAEFAQNV SFNRERIQKA LPAGHLDATT LADYLVKKAS DFIFENWELR LQMRNGIPFR TSHDIVGRSV ALCVSRNCEL QDLSLDELNS LNPIFDKDVY
501: EYLGVENSIK KFRSYGSTGS ECVAGQLDYW MDKLSISRER

Best Arabidopsis Sequence Match ( AT5G10920.1 )
(BLAST)

001: MGAIDLSFSQ SLLFSSSRSN LSSSTHRSVS FLPPGSKSRC LPPLRSMSHD DDTASKEVKL WGGRFEESVT EKVEKFTESI SFDKVLYKQD IMGSKAHASM
101: LAHQGLITDS DKDSILRGLD DIERQIEANK FEWRTDREDV HMNIEAALTD LIGEPAKKLH TARSRNDQVA TDFRLWCRDA IDTIIVKIRN LQRALVELAL
201: KNEALIVPGY THLQRAQPVL LPHVLLTFVE QLERDAGRYV DCRARLNFSP LGACALAGTG LPIDRFMTAN ALGFTEPMRN SIDAVSDRDF VLEFLYTNAN
301: TGIHLSRLGE EWVLWASEEF GFMTPSDSVS TGSSIMPQKK NPDPMELVRG KSARVIGDLV TVLTLCKGLP LAYNRDFQED KEPMFDSTKT IMGMIDVSAE
401: FAQNVTFNED RIKKSLPAGH LDATTLADYL VKKGMPFRSS HDIVGKLVGV CVSKGCELQN LSLEEMKKLS PVFEEDVFGF LGVENSVNKF SSYGSTGSNC
501: VAEQLGYWVN KLNITST

Arabidopsis Description

Argininosuccinate lyase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LEU8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.