CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 1
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH52951
KRH62224

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G10920.1	KRH52951	AT5G10920.1	21798944
AT5G10920.1	KRH62224	AT5G10920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH52951	Soybean	plastid	91.8	91.09
VIT_18s0001g07590.t01	Wine grape	cytosol	76.95	82.43
GSMUA_Achr11P...	Banana	cytosol	74.22	78.67
CDY69492	Canola	cytosol, peroxisome	36.13	77.41
Solyc04g076320.2.1	Tomato	plastid	74.8	72.95
PGSC0003DMT400024170	Potato	plastid	75.59	71.67
CDX69799	Canola	plastid	68.75	71.11
CDX97066	Canola	plastid	71.68	70.71
AT5G10920.1	Thale cress	plastid	71.09	70.41
EER94983	Sorghum	plastid	70.7	70.16
TraesCS4D01G186300.1	Wheat	plastid	69.73	69.19
TraesCS4A01G119700.1	Wheat	plastid	69.73	69.19
CDY14477	Canola	plastid	61.13	67.02
CDY69491	Canola	cytosol	15.43	52.67
HORVU4Hr1G054060.3	Barley	plastid	65.23	45.26
TraesCS4B01G185000.1	Wheat	plastid	65.43	45.15
Os03t0305500-02	Rice	plastid	66.02	45.01
Zm00001d047667_P001	Maize	plastid	69.73	40.57
Bra009004.1-P	Field mustard	mitochondrion, plastid	71.48	38.94
TraesCS5B01G299700.1	Wheat	plastid	18.95	19.64
TraesCS5D01G307100.1	Wheat	mitochondrion, plastid	18.55	19.23
HORVU5Hr1G078800.2	Barley	plastid	18.36	18.99

Protein Annotations

KEGG:00220+4.3.2.1	KEGG:00250+4.3.2.1	Gene3D:1.10.275.10	Gene3D:1.10.40.30	Gene3D:1.20.200.10	EntrezGene:100796544
MapMan:4.1.1.1.2.4	EMBL:ACUP02002227	InterPro:Arg_succ_lyase_C	InterPro:Argininosuccinate_lyase	InterPro:Fumarase/histidase_N	InterPro:Fumarate_lyase_CS
InterPro:Fumarate_lyase_N	InterPro:Fumarate_lyase_fam	EnsemblPlantsGene:GLYMA_04G094600	GO:GO:0003674	GO:GO:0003824	GO:GO:0004056
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0042450	UniProt:I1JV68	InterPro:IPR024083	EnsemblPlants:KRH62224
ProteinID:KRH62224	ProteinID:KRH62224.1	InterPro:L-Aspartase-like	HAMAP:MF_00006	PFAM:PF00206	PFAM:PF14698
PRINTS:PR00145	PRINTS:PR00149	ScanProsite:PS00163	PANTHER:PTHR43814	MetaCyc:PWY-4983	MetaCyc:PWY-4984
MetaCyc:PWY-5	MetaCyc:PWY-5154	MetaCyc:PWY-7400	SUPFAM:SSF48557	TIGRFAMs:TIGR00838	UniParc:UPI00023397E9
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:8438799..8442766

Molecular Weight (calculated)

56862.5 Da

IEP (calculated)

5.867

GRAVY (calculated)

-0.104

Length

512 amino acids

Sequence
(BLAST)

001: MGSIGTVCSS FITAPPSSSS LSRTTPSFCC AFPSRRIIIK PRMGPYPAQA QPKEAKLWGG RFEEGVTDVV ERFTESISFD KQLYKQDIMG SRAHATMLAH
101: QGLITVSDRD SILQGLDEIE RRIENGEFNW RADREDVHMN IEAALTDLIG EPAKKLHTAR SRNDQVLTDF RLWCRDAIDK ILVSMKQLQV SLITLALNNE
201: GLIVPGYTHL QRAQPVLLQH LLLAYVEEIE RDAGRLVDCR ARMNFCPLGA CALAGTGLPI DRFMTSEALG FTAPLRNSID AVSDRDFVLE FLSANAITAV
301: HLSRLGEEWV LWASEEFGFI TPSDSVSTGS SIMPQKKNPD PMELVRGKSA RVIGDLVTLL TLCKGLPHAY NRDLQEDKEP VFDSVKTILG MLEVSAEFAL
401: KITFNRERIQ KALPAGHLDA TTLADYLVNK GVPFRTSHDI AGKSVALCTL KNCQLLDLSL DELRSINPVF EEDVYEFLGV ENAIKKFVSY GSTGSACVAS
501: QLDYWLKKLE MK

Best Arabidopsis Sequence Match ( AT5G10920.1 )
(BLAST)

001: MGAIDLSFSQ SLLFSSSRSN LSSSTHRSVS FLPPGSKSRC LPPLRSMSHD DDTASKEVKL WGGRFEESVT EKVEKFTESI SFDKVLYKQD IMGSKAHASM
101: LAHQGLITDS DKDSILRGLD DIERQIEANK FEWRTDREDV HMNIEAALTD LIGEPAKKLH TARSRNDQVA TDFRLWCRDA IDTIIVKIRN LQRALVELAL
201: KNEALIVPGY THLQRAQPVL LPHVLLTFVE QLERDAGRYV DCRARLNFSP LGACALAGTG LPIDRFMTAN ALGFTEPMRN SIDAVSDRDF VLEFLYTNAN
301: TGIHLSRLGE EWVLWASEEF GFMTPSDSVS TGSSIMPQKK NPDPMELVRG KSARVIGDLV TVLTLCKGLP LAYNRDFQED KEPMFDSTKT IMGMIDVSAE
401: FAQNVTFNED RIKKSLPAGH LDATTLADYL VKKGMPFRSS HDIVGKLVGV CVSKGCELQN LSLEEMKKLS PVFEEDVFGF LGVENSVNKF SSYGSTGSNC
501: VAEQLGYWVN KLNITST

Arabidopsis Description

Argininosuccinate lyase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LEU8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.