Factsheet for Bra009004.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
nucleus 1
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra009004.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G10920.1	Bra009004.1-P	AT5G10920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69799	Canola	plastid	49.68	94.34
AT5G10920.1	Thale cress	plastid	48.94	88.97
VIT_18s0001g07590.t01	Wine grape	cytosol	39.36	77.41
GSMUA_Achr11P...	Banana	cytosol	37.77	73.5
Solyc04g076320.2.1	Tomato	plastid	40.21	72.0
KRH62224	Soybean	plastid	38.94	71.48
KRH52951	Soybean	plastid	39.15	71.32
PGSC0003DMT400024170	Potato	plastid	39.57	68.89
TraesCS4D01G186300.1	Wheat	plastid	36.7	66.86
TraesCS4A01G119700.1	Wheat	plastid	36.6	66.67
EER94983	Sorghum	plastid	36.6	66.67
HORVU4Hr1G054060.3	Barley	plastid	35.85	45.66
Os03t0305500-02	Rice	plastid	36.38	45.54
TraesCS4B01G185000.1	Wheat	plastid	35.11	44.47
Zm00001d047667_P001	Maize	plastid	38.3	40.91
TraesCS5D01G307100.1	Wheat	mitochondrion, plastid	10.64	20.24
TraesCS5B01G299700.1	Wheat	plastid	10.0	19.03
HORVU5Hr1G078800.2	Barley	plastid	9.89	18.79

Protein Annotations

KEGG:00220+4.3.2.1	KEGG:00250+4.3.2.1	Gene3D:1.10.150.170	Gene3D:1.10.275.10	Gene3D:1.10.40.30	Gene3D:1.20.200.10
Gene3D:3.40.50.150	MapMan:4.1.1.1.2.4	InterPro:Arg_succ_lyase_C	InterPro:Argininosuccinate_lyase	EnsemblPlantsGene:Bra009004	EnsemblPlants:Bra009004.1
EnsemblPlants:Bra009004.1-P	ncoils:Coil	InterPro:Fumarase/histidase_N	InterPro:Fumarate_lyase_CS	InterPro:Fumarate_lyase_N	InterPro:Fumarate_lyase_fam
GO:GO:0003674	GO:GO:0003824	GO:GO:0004056	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168
GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0032259	GO:GO:0042450	InterPro:IPR023397
InterPro:IPR024083	InterPro:L-Aspartase-like	UniProt:M4CXQ7	HAMAP:MF_00006	HAMAP:MF_01007	PFAM:PF00206
PFAM:PF01795	PFAM:PF14698	PRINTS:PR00145	PRINTS:PR00149	ScanProsite:PS00163	PANTHER:PTHR43814
InterPro:RsmH	InterPro:SAM-dep_MeTrfase_MraW_recog	InterPro:SAM-dependent_MTases	SUPFAM:SSF48557	SUPFAM:SSF53335	SUPFAM:SSF81799
TIGRFAMs:TIGR00006	TIGRFAMs:TIGR00838	UniParc:UPI00025444DC	SEG:seg	:	:

Description

AT5G10920 (E=1e-258) | argininosuccinate lyase, putative / arginosuccinase, putative

Coordinates

chrA10:-:14811980..14816038

Molecular Weight (calculated)

105094.0 Da

IEP (calculated)

7.362

GRAVY (calculated)

-0.365

Length

940 amino acids

Sequence
(BLAST)

001: MAGAIRVKHM FLYSSILASN NNINKALSRL PRRGISVIAG NLSSSETKKK EKEKRKRRKE IEVARETAEA VVKKEKRRTR SSREYEIGDG DGEAPSSHVP
101: VMLGEVMDVF SSVRLRSFVD CTLGAAGHSS SIIQSHSELN HFVGMDVDPV ARKLAHFHID SIVHPTLKAS IVLKNFKYIK SAVADSHPEL LDVGVDGILM
201: DLGMSSMQVN NPERGFSVLQ QGPLDMRMDP QASLTAEDIV NSWPESELGR ILREYGEESN WHLLQTRIVK ARLTGGLHST GDLVDLIKRM SPPSRGGRQG
301: WIKTATRVFQ GLRIAVNDEL KTLQNALYSS FDVLSPGGRL AVISFHSLED RVVKQTFLDI LGFQREETNA EMSVKPERQI EERIDKELKE KEAWIKQTVI
401: SSKGVILTKR PITPSEEEEK LNRRARSAKL RSLLFSPSRS YPPSSTPRSV SFLPPGSKSR SLPPLRSMSS HDDNDTASKE TKLWGGRFEE SVTEKVEKFT
501: ESISFDKVLY KQDIMGSKAH ATMLAHQGLI TDTDRDSILQ GLDEIERKIE RDEFEWRTDR EDVHMNIEAA LTDLIGEPAK KLHTARSRND QVATDFRLWC
601: RDAIDTVIAK IKNLQTALVQ LALKNEGLIV PGYTHLQRAQ PVLLPHVLLT YVEQLERDAG RYIDCRERLN FCPLGACALA GTGLPIDRFM TATALGFTEP
701: MRNSIDAVSD RDFVLEFLYA NSNTAIHLSR LGEEWVLWAS EEFGFMTPSD SVSTGSSIMP QKKNPDPMEL VRGKSARVIG DLVTVLTLCK GLPLAYNRDF
801: QEDKEPMFDS TKTIMGMIDV SAEFAQNVTF NEERIKRSLP AGHLDATTLA DYLVKKGMPF RSSHDVVGKL VGVCVSRGCE LQNLSLEEMK KLSPVFEEDV
901: FGFLGVENSV NKFSSYGSTG SNCVAEQLGY WVNKLKITST

Best Arabidopsis Sequence Match ( AT5G10920.1 )
(BLAST)

001: MGAIDLSFSQ SLLFSSSRSN LSSSTHRSVS FLPPGSKSRC LPPLRSMSHD DDTASKEVKL WGGRFEESVT EKVEKFTESI SFDKVLYKQD IMGSKAHASM
101: LAHQGLITDS DKDSILRGLD DIERQIEANK FEWRTDREDV HMNIEAALTD LIGEPAKKLH TARSRNDQVA TDFRLWCRDA IDTIIVKIRN LQRALVELAL
201: KNEALIVPGY THLQRAQPVL LPHVLLTFVE QLERDAGRYV DCRARLNFSP LGACALAGTG LPIDRFMTAN ALGFTEPMRN SIDAVSDRDF VLEFLYTNAN
301: TGIHLSRLGE EWVLWASEEF GFMTPSDSVS TGSSIMPQKK NPDPMELVRG KSARVIGDLV TVLTLCKGLP LAYNRDFQED KEPMFDSTKT IMGMIDVSAE
401: FAQNVTFNED RIKKSLPAGH LDATTLADYL VKKGMPFRSS HDIVGKLVGV CVSKGCELQN LSLEEMKKLS PVFEEDVFGF LGVENSVNKF SSYGSTGSNC
501: VAEQLGYWVN KLNITST

Arabidopsis Description

Argininosuccinate lyase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LEU8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.