Factsheet for TraesCS4B01G185000.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G119700.1
TraesCS4B01G185000.1
TraesCS4D01G186300.1
TraesCS5B01G299700.1
TraesCS5D01G307100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G10920.1	TraesCS4A01G119700.1	AT5G10920.1	21798944
AT5G10920.1	TraesCS4B01G185000.1	AT5G10920.1	21798944
AT5G10920.1	TraesCS4D01G186300.1	AT5G10920.1	21798944
AT5G10920.1	TraesCS5B01G299700.1	AT5G10920.1	21798944
AT5G10920.1	TraesCS5D01G307100.1	AT5G10920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G054060.3	Barley	plastid	93.13	93.63
TraesCS4D01G186300.1	Wheat	plastid	58.89	84.69
TraesCS4A01G119700.1	Wheat	plastid	58.89	84.69
EER94983	Sorghum	plastid	54.99	79.07
GSMUA_Achr11P...	Banana	cytosol	46.23	71.01
VIT_18s0001g07590.t01	Wine grape	cytosol	44.74	69.46
KRH62224	Soybean	plastid	45.15	65.43
KRH52951	Soybean	plastid	44.88	64.53
CDY69492	Canola	cytosol, peroxisome	20.62	64.02
Os03t0305500-02	Rice	plastid	64.56	63.78
Solyc04g076320.2.1	Tomato	plastid	44.34	62.67
CDX69799	Canola	plastid	41.51	62.22
CDX97066	Canola	plastid	43.4	62.04
AT5G10920.1	Thale cress	plastid	42.86	61.51
PGSC0003DMT400024170	Potato	plastid	44.2	60.74
CDY14477	Canola	plastid	37.6	59.74
Zm00001d047667_P001	Maize	plastid	63.75	53.75
CDY69491	Canola	cytosol	9.57	47.33
Bra009004.1-P	Field mustard	mitochondrion, plastid	44.47	35.11
TraesCS5B01G299700.1	Wheat	plastid	13.88	20.85

Protein Annotations

KEGG:00220+4.3.2.1	KEGG:00250+4.3.2.1	Gene3D:1.10.275.10	Gene3D:1.10.40.30	Gene3D:1.20.200.10	MapMan:4.1.1.1.2.4
InterPro:Arg_succ_lyase_C	InterPro:Argininosuccinate_lyase	InterPro:Fumarase/histidase_N	InterPro:Fumarate_lyase_CS	InterPro:Fumarate_lyase_N	InterPro:Fumarate_lyase_fam
GO:GO:0003674	GO:GO:0003824	GO:GO:0004056	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0042450	InterPro:IPR024083	InterPro:L-Aspartase-like	HAMAP:MF_00006	PFAM:PF00206
PFAM:PF14698	PRINTS:PR00145	PRINTS:PR00149	ScanProsite:PS00163	PANTHER:PTHR43814	SUPFAM:SSF48557
TIGRFAMs:TIGR00838	EnsemblPlantsGene:TraesCS4B01G185000	EnsemblPlants:TraesCS4B01G185000.1	TIGR:cd01359	SEG:seg	:

Description

No Description!

Coordinates

chr4B:-:404513993..404526558

Molecular Weight (calculated)

81329.2 Da

IEP (calculated)

8.998

GRAVY (calculated)

-0.398

Length

742 amino acids

Sequence
(BLAST)

001: MSTTPRGRSS SRRRTGCCKC AGGGGGGKPS TPCCFNPLRS LFRCPGRGRG RSRSRSHSHS RNRTAPSRVS ADIGTEQQGQ EPSFFVYSMG SAAENKKKKH
101: RKARLPSIRS CFRSKKKERK ASARRQPLTP APSMVTHPPR SPPAPENTPA VASGVTSTQP PSPAFTETGN VNSPATSDRR TAPTGPGKQP STDSAWAPFP
201: PQRQQPKQQV DGLQIVEVAT GERLSAHEAA LIEMVESSTD DSAESSMKSS LEFINEPSPQ TPVKRVVADR ETAVVKAAAR EAPRLWLNGN AAKAGAGARF
301: SEPLVVAEAN ELWAHDIACS RAHAAMLADT GLITTGDRDI ILEGLDQIEK QIQDGKFEWR KDREDVHMNI EAALIEKVGE PAKKLHTARS RNDQIVTDLR
401: LWCRDAIDKI LIRIKQFQVS LVLLASKYVD LIVPGYTHLQ RAQPVLLPHL LLSYVEQLER DAGRLIDCRE RVNFCPLGAC ALAGTGLPID RFKTAKDLKF
501: TAPMKNSIDA VSDRDFVLEF LAANSIAAIH LSRIGEEWVL WASEEFGFLT PSDLVSTGSS IMPQKKNPDP MELVRGKSAR VVGDLMTVLV LCKGLPQAYN
601: RDLQEDKEPL FDSVKAILGM LEVCSEFAQN ISFNSKRIQS SLPAGYLDAT TLADYLVKKG VPFRTSHEIV GRCVALCVSK NCQLTELEMD DLKAVHPVFE
701: ADVYAYLGVE NAVNKFISYG STGSEQVKKQ LEDWRVQLGI NP

Best Arabidopsis Sequence Match ( AT5G10920.1 )
(BLAST)

001: MGAIDLSFSQ SLLFSSSRSN LSSSTHRSVS FLPPGSKSRC LPPLRSMSHD DDTASKEVKL WGGRFEESVT EKVEKFTESI SFDKVLYKQD IMGSKAHASM
101: LAHQGLITDS DKDSILRGLD DIERQIEANK FEWRTDREDV HMNIEAALTD LIGEPAKKLH TARSRNDQVA TDFRLWCRDA IDTIIVKIRN LQRALVELAL
201: KNEALIVPGY THLQRAQPVL LPHVLLTFVE QLERDAGRYV DCRARLNFSP LGACALAGTG LPIDRFMTAN ALGFTEPMRN SIDAVSDRDF VLEFLYTNAN
301: TGIHLSRLGE EWVLWASEEF GFMTPSDSVS TGSSIMPQKK NPDPMELVRG KSARVIGDLV TVLTLCKGLP LAYNRDFQED KEPMFDSTKT IMGMIDVSAE
401: FAQNVTFNED RIKKSLPAGH LDATTLADYL VKKGMPFRSS HDIVGKLVGV CVSKGCELQN LSLEEMKKLS PVFEEDVFGF LGVENSVNKF SSYGSTGSNC
501: VAEQLGYWVN KLNITST

Arabidopsis Description

Argininosuccinate lyase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LEU8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.