CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
peroxisome 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69799
CDX97066
CDY14477
CDY69491
CDY69492

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G10920.1	CDX69799	AT5G10920.1	21798944
AT5G10920.1	CDX97066	AT5G10920.1	21798944
AT5G10920.1	CDY14477	AT5G10920.1	21798944
AT5G10920.1	CDY69491	AT5G10920.1	21798944
AT5G10920.1	CDY69492	AT5G10920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69799	Canola	plastid	80.67	24.44
CDX97066	Canola	plastid	80.0	23.12
AT5G10920.1	Thale cress	plastid	77.33	22.44
CDY14477	Canola	plastid	60.67	19.49
VIT_18s0001g07590.t01	Wine grape	cytosol	58.0	18.2
Solyc04g076320.2.1	Tomato	plastid	56.67	16.19
PGSC0003DMT400024170	Potato	plastid	56.67	15.74
GSMUA_Achr11P...	Banana	cytosol	50.67	15.73
KRH62224	Soybean	plastid	52.67	15.43
KRH52951	Soybean	plastid	52.67	15.31
TraesCS4A01G119700.1	Wheat	plastid	47.33	13.76
TraesCS4D01G186300.1	Wheat	plastid	47.33	13.76
EER94983	Sorghum	plastid	46.67	13.57
HORVU4Hr1G054060.3	Barley	plastid	47.33	9.62
TraesCS4B01G185000.1	Wheat	plastid	47.33	9.57
Os03t0305500-02	Rice	plastid	47.33	9.45
Zm00001d047667_P001	Maize	plastid	46.67	7.95
TraesCS5B01G299700.1	Wheat	plastid	14.0	4.25
TraesCS5D01G307100.1	Wheat	mitochondrion, plastid	14.0	4.25
HORVU5Hr1G078800.2	Barley	plastid	12.67	3.84
CDY69492	Canola	cytosol, peroxisome	0.0	0.0

Protein Annotations

KEGG:00220+4.3.2.1	KEGG:00250+4.3.2.1	Gene3D:1.10.40.30	MapMan:35.1	GO:A0A078JV69	UniProt:A0A078JV69
InterPro:Arg_succ_lyase_C	InterPro:Argininosuccinate_lyase	EnsemblPlants:CDY69491	ProteinID:CDY69491	ProteinID:CDY69491.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004056	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0042450	EnsemblPlantsGene:GSBRNA2T00088172001	InterPro:L-Aspartase-like	PFAM:PF14698	PANTHER:PTHR43814	MetaCyc:PWY-4983
MetaCyc:PWY-4984	MetaCyc:PWY-5	MetaCyc:PWY-5154	MetaCyc:PWY-7400	SUPFAM:SSF48557	UniPathway:UPA00068
UniParc:UPI0004EEFDA6	:	:	:	:	:

Description

BnaCnng63840DBnaCnng63840D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JV69]

Coordinates

chrLK039556:-:1946..2467

Molecular Weight (calculated)

16934.4 Da

IEP (calculated)

9.226

GRAVY (calculated)

-0.175

Length

150 amino acids

Sequence
(BLAST)

001: MFDSTRTITG MIDVSAEFAQ KVTFNRERIK RSLPADATTL ADYLVKKGMP FRSSHDVVGK LVGVCVSRGC ELQNLSLEEM KKLSRVFEKD VFGFFGVENS
101: VDKFSSYGST GSNCVAEQLG YWVHKLKITA TWFKNRTIRL ITAAVFEEDR

Best Arabidopsis Sequence Match ( AT5G10920.1 )
(BLAST)

001: MGAIDLSFSQ SLLFSSSRSN LSSSTHRSVS FLPPGSKSRC LPPLRSMSHD DDTASKEVKL WGGRFEESVT EKVEKFTESI SFDKVLYKQD IMGSKAHASM
101: LAHQGLITDS DKDSILRGLD DIERQIEANK FEWRTDREDV HMNIEAALTD LIGEPAKKLH TARSRNDQVA TDFRLWCRDA IDTIIVKIRN LQRALVELAL
201: KNEALIVPGY THLQRAQPVL LPHVLLTFVE QLERDAGRYV DCRARLNFSP LGACALAGTG LPIDRFMTAN ALGFTEPMRN SIDAVSDRDF VLEFLYTNAN
301: TGIHLSRLGE EWVLWASEEF GFMTPSDSVS TGSSIMPQKK NPDPMELVRG KSARVIGDLV TVLTLCKGLP LAYNRDFQED KEPMFDSTKT IMGMIDVSAE
401: FAQNVTFNED RIKKSLPAGH LDATTLADYL VKKGMPFRSS HDIVGKLVGV CVSKGCELQN LSLEEMKKLS PVFEEDVFGF LGVENSVNKF SSYGSTGSNC
501: VAEQLGYWVN KLNITST

Arabidopsis Description

Argininosuccinate lyase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LEU8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.