Factsheet for VIT_18s0001g07590.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
peroxisome 1
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_18s0001g07590.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G10920.1	VIT_18s0001g07590.t01	AT5G10920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	79.5	78.67
KRH62224	Soybean	plastid	82.43	76.95
KRH52951	Soybean	plastid	81.8	75.78
CDY69492	Canola	cytosol, peroxisome	37.66	75.31
Solyc04g076320.2.1	Tomato	plastid	82.22	74.86
PGSC0003DMT400024170	Potato	plastid	82.85	73.33
CDX69799	Canola	plastid	73.85	71.31
CDX97066	Canola	plastid	77.41	71.29
AT5G10920.1	Thale cress	plastid	76.57	70.79
TraesCS4A01G119700.1	Wheat	plastid	74.69	69.19
TraesCS4D01G186300.1	Wheat	plastid	74.69	69.19
EER94983	Sorghum	plastid	74.27	68.8
CDY14477	Canola	plastid	64.23	65.74
CDY69491	Canola	cytosol	18.2	58.0
HORVU4Hr1G054060.3	Barley	plastid	70.08	45.39
TraesCS4B01G185000.1	Wheat	plastid	69.46	44.74
Os03t0305500-02	Rice	plastid	69.87	44.47
Zm00001d047667_P001	Maize	plastid	73.64	40.0
Bra009004.1-P	Field mustard	mitochondrion, plastid	77.41	39.36
TraesCS5B01G299700.1	Wheat	plastid	21.13	20.45
TraesCS5D01G307100.1	Wheat	mitochondrion, plastid	20.5	19.84
HORVU5Hr1G078800.2	Barley	plastid	20.5	19.8

Protein Annotations

KEGG:00220+4.3.2.1	KEGG:00250+4.3.2.1	Gene3D:1.10.275.10	Gene3D:1.10.40.30	Gene3D:1.20.200.10	EntrezGene:100262660
wikigene:100262660	MapMan:4.1.1.1.2.4	InterPro:Arg_succ_lyase_C	InterPro:Argininosuccinate_lyase	ProteinID:CBI19271	ProteinID:CBI19271.3
UniProt:E0CRW7	EMBL:FN595227	InterPro:Fumarase/histidase_N	InterPro:Fumarate_lyase_CS	InterPro:Fumarate_lyase_N	InterPro:Fumarate_lyase_fam
GO:GO:0003674	GO:GO:0003824	GO:GO:0004056	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0042450
InterPro:IPR024083	InterPro:L-Aspartase-like	EntrezGene:LOC100262660	wikigene:LOC100262660	HAMAP:MF_00006	PFAM:PF00206
PFAM:PF14698	PRINTS:PR00145	PRINTS:PR00149	ScanProsite:PS00163	PANTHER:PTHR43814	SUPFAM:SSF48557
TIGRFAMs:TIGR00838	UniParc:UPI0001BE162D	ArrayExpress:VIT_18s0001g07590	EnsemblPlantsGene:VIT_18s0001g07590	EnsemblPlants:VIT_18s0001g07590.t01	RefSeq:XP_002283809
RefSeq:XP_002283809.1	:	:	:	:	:

Description

No Description!

Coordinates

chr18:-:5833823..5844605

Molecular Weight (calculated)

53341.8 Da

IEP (calculated)

5.632

GRAVY (calculated)

-0.216

Length

478 amino acids

Sequence
(BLAST)

001: MKTSATDPST KKAKEAKLWG GRFEEGVTDA VERFTESISF DKALYKQDIM GSRAHASMLA HQGLISVSDR DSILQGLDNI ERRIEDGEFV WRTDREDVHM
101: NIEAALTDLI GEPAKKLHTA RSRNDQVLTD FRLWCRDAID NIVARIEHLQ VALVTLAMKN ENLIVPGYTH LQRAQPILLQ HLLLAYVEQL DRDAGRLLDC
201: RQRLNFCPLG ACALAGTGLP IDRFMTSHDL GFNAPMRNSI DAVSDRDFVL EFLSANSITA IHLSRLGEEW VLWASEEFGF LTPSDSVSTG SSIMPQKKNP
301: DPMELVRGKS ARVVGDLVTL LVLCKGLPHA YNRDLQEDKE PTFDSTKTII GMLEVCAEFA QNITFNREKI KKALPAGHLD ATTLADYLVK KGIPFRTSHD
401: IVGKSVALCV SKNCQLQDLS LDELRSVNPV FDEDVYEFLG VENAVKKFCS YGSTGSECVA EQLDFWVTKL QINTAGHK

Best Arabidopsis Sequence Match ( AT5G10920.1 )
(BLAST)

001: MGAIDLSFSQ SLLFSSSRSN LSSSTHRSVS FLPPGSKSRC LPPLRSMSHD DDTASKEVKL WGGRFEESVT EKVEKFTESI SFDKVLYKQD IMGSKAHASM
101: LAHQGLITDS DKDSILRGLD DIERQIEANK FEWRTDREDV HMNIEAALTD LIGEPAKKLH TARSRNDQVA TDFRLWCRDA IDTIIVKIRN LQRALVELAL
201: KNEALIVPGY THLQRAQPVL LPHVLLTFVE QLERDAGRYV DCRARLNFSP LGACALAGTG LPIDRFMTAN ALGFTEPMRN SIDAVSDRDF VLEFLYTNAN
301: TGIHLSRLGE EWVLWASEEF GFMTPSDSVS TGSSIMPQKK NPDPMELVRG KSARVIGDLV TVLTLCKGLP LAYNRDFQED KEPMFDSTKT IMGMIDVSAE
401: FAQNVTFNED RIKKSLPAGH LDATTLADYL VKKGMPFRSS HDIVGKLVGV CVSKGCELQN LSLEEMKKLS PVFEEDVFGF LGVENSVNKF SSYGSTGSNC
501: VAEQLGYWVN KLNITST

Arabidopsis Description

Argininosuccinate lyase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LEU8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.