Factsheet for Os03t0305500-02

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0305500-02

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G10920.1	Os03t0305500-02	AT5G10920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER94983	Sorghum	plastid	56.06	81.59
TraesCS4D01G186300.1	Wheat	plastid	55.26	80.43
TraesCS4A01G119700.1	Wheat	plastid	55.13	80.23
GSMUA_Achr11P...	Banana	cytosol	45.67	71.01
VIT_18s0001g07590.t01	Wine grape	cytosol	44.47	69.87
KRH62224	Soybean	plastid	45.01	66.02
KRH52951	Soybean	plastid	44.87	65.31
TraesCS4B01G185000.1	Wheat	plastid	63.78	64.56
HORVU4Hr1G054060.3	Barley	plastid	62.72	63.82
CDY69492	Canola	cytosol, peroxisome	20.24	63.6
Solyc04g076320.2.1	Tomato	plastid	44.34	63.43
CDX97066	Canola	plastid	43.28	62.62
CDX69799	Canola	plastid	41.15	62.42
AT5G10920.1	Thale cress	plastid	42.74	62.09
PGSC0003DMT400024170	Potato	plastid	43.81	60.93
CDY14477	Canola	plastid	36.62	58.89
Zm00001d047667_P001	Maize	plastid	59.39	50.68
CDY69491	Canola	cytosol	9.45	47.33
Bra009004.1-P	Field mustard	mitochondrion, plastid	45.54	36.38

Protein Annotations

KEGG:00220+4.3.2.1	KEGG:00250+4.3.2.1	Gene3D:1.10.275.10	Gene3D:1.10.40.30	Gene3D:1.20.200.10	MapMan:4.1.1.1.2.4
EntrezGene:4332596	UniProt:A0A024FLK4	EMBL:AB863632	InterPro:Arg_succ_lyase_C	InterPro:Argininosuccinate_lyase	ProteinID:BAS83803.1
InterPro:Fumarase/histidase_N	InterPro:Fumarate_lyase_CS	InterPro:Fumarate_lyase_N	InterPro:Fumarate_lyase_fam	GO:GO:0003674	GO:GO:0003824
GO:GO:0004056	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016829
GO:GO:0042450	InterPro:IPR024083	InterPro:L-Aspartase-like	HAMAP:MF_00006	EnsemblPlantsGene:Os03g0305500	EnsemblPlants:Os03t0305500-02
PFAM:PF00206	PFAM:PF14698	PRINTS:PR00145	PRINTS:PR00149	ScanProsite:PS00163	PANTHER:PTHR43814
SUPFAM:SSF48557	TIGRFAMs:TIGR00838	UniParc:UPI0004586DCA	SEG:seg	:	:

Description

ARGININOSUCCINATE LYASE 1Argininosuccinate lyase, Root elongation (Os03t0305500-01);Argininosuccinate lyase, Splicing variant with unknown function (Os03t0305500-02)

Coordinates

chr3:+:10841438..10847469

Molecular Weight (calculated)

81940.8 Da

IEP (calculated)

9.404

GRAVY (calculated)

-0.396

Length

751 amino acids

Sequence
(BLAST)

001: MSTVATPRGR SSQRRTRCKC AGGGGGDRAA ACCFNPLRSL FRCPGRGRGR RSRSRSRHTT PSKVRDASVA GGVEQQSEEP SFFVYAMPNQ GGGDGVTADH
101: SKKKKKKKHS KPRLPSIRSC FRGKKNKERK ANAAAVVARR QALTPAPSLV THPPHSPSTP EKTQAATPSA TQPPSPAVTE DGRTNSPATP NRIIPVTPRP
201: GKHSTSSASA PSPFPPQWQQ PKQVEGLEIV EVATGERLSA HDVGLIEMVG SSADVSAESS VKSSLDYAND PPQQLTVSSK RKPAVVKATE PTRVWLNGNA
301: VKGKAGERFT GPPVAGEADE LWAHDIACSR VHAVMLAETG LITAGDKDII LEGLDQIEKL IQDGKFEWRT DREDVHMNIE AALIEKVGEP AKKLHTARSR
401: NDQIVTDLRL WCRDAIDKIL FRIKQFQVSL VLLASKYVDL IVPGYTHLQR AQPVLLPHLL LSYVEQLERD AGRLVNCRER LNFCPLGACA LAGTGLPIDR
501: FKTAKDLKFT APMKNSIDAV SDRDFVLEFL AANSIAAVHL SRIGEEWVLW ASEEFGFLTP SDSVSTGSSI MPQKKNPDPM ELVRGKSARV FGDLMTVLTL
601: CKGLPQAYNR DLQEDKEPLF DSVKAVLGML EVCTEFAQNI SFNSKRIQSS LPAGYLDATT LADYLVKKGV PFRTSHEIVG RSVALCVSKN CQLAELGLDD
701: LKSVHPVFEG DVYEYLGVEN AVNKFISYGS TGSEQVKKQL EDWRTQLGIS S

Best Arabidopsis Sequence Match ( AT5G10920.1 )
(BLAST)

001: MGAIDLSFSQ SLLFSSSRSN LSSSTHRSVS FLPPGSKSRC LPPLRSMSHD DDTASKEVKL WGGRFEESVT EKVEKFTESI SFDKVLYKQD IMGSKAHASM
101: LAHQGLITDS DKDSILRGLD DIERQIEANK FEWRTDREDV HMNIEAALTD LIGEPAKKLH TARSRNDQVA TDFRLWCRDA IDTIIVKIRN LQRALVELAL
201: KNEALIVPGY THLQRAQPVL LPHVLLTFVE QLERDAGRYV DCRARLNFSP LGACALAGTG LPIDRFMTAN ALGFTEPMRN SIDAVSDRDF VLEFLYTNAN
301: TGIHLSRLGE EWVLWASEEF GFMTPSDSVS TGSSIMPQKK NPDPMELVRG KSARVIGDLV TVLTLCKGLP LAYNRDFQED KEPMFDSTKT IMGMIDVSAE
401: FAQNVTFNED RIKKSLPAGH LDATTLADYL VKKGMPFRSS HDIVGKLVGV CVSKGCELQN LSLEEMKKLS PVFEEDVFGF LGVENSVNKF SSYGSTGSNC
501: VAEQLGYWVN KLNITST

Arabidopsis Description

Argininosuccinate lyase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LEU8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.