CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
peroxisome 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69799
CDX97066
CDY14477
CDY69491
CDY69492

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G10920.1	CDX69799	AT5G10920.1	21798944
AT5G10920.1	CDX97066	AT5G10920.1	21798944
AT5G10920.1	CDY14477	AT5G10920.1	21798944
AT5G10920.1	CDY69491	AT5G10920.1	21798944
AT5G10920.1	CDY69492	AT5G10920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97066	Canola	plastid	83.51	75.14
CDX69799	Canola	plastid	78.59	74.14
AT5G10920.1	Thale cress	plastid	80.94	73.11
CDY69492	Canola	cytosol, peroxisome	36.83	71.97
VIT_18s0001g07590.t01	Wine grape	cytosol	65.74	64.23
GSMUA_Achr11P...	Banana	cytosol	63.81	61.7
KRH62224	Soybean	plastid	67.02	61.13
CDY69491	Canola	cytosol	19.49	60.67
KRH52951	Soybean	plastid	66.6	60.27
Solyc04g076320.2.1	Tomato	plastid	66.38	59.05
EER94983	Sorghum	plastid	63.81	57.75
TraesCS4D01G186300.1	Wheat	plastid	63.38	57.36
PGSC0003DMT400024170	Potato	plastid	66.17	57.22
TraesCS4A01G119700.1	Wheat	plastid	63.17	57.17
HORVU4Hr1G054060.3	Barley	plastid	60.39	38.21
TraesCS4B01G185000.1	Wheat	plastid	59.74	37.6
Os03t0305500-02	Rice	plastid	58.89	36.62
Zm00001d047667_P001	Maize	plastid	62.31	33.07
TraesCS5D01G307100.1	Wheat	mitochondrion, plastid	16.27	15.38
TraesCS5B01G299700.1	Wheat	plastid	15.2	14.37
HORVU5Hr1G078800.2	Barley	plastid	14.56	13.74

Protein Annotations

KEGG:00220+4.3.2.1	KEGG:00250+4.3.2.1	Gene3D:1.10.275.10	Gene3D:1.20.200.10	MapMan:4.1.1.1.2.4	GO:A0A078FNN2
UniProt:A0A078FNN2	InterPro:Arg_succ_lyase_C	InterPro:Argininosuccinate_lyase	EnsemblPlants:CDY14477	ProteinID:CDY14477	ProteinID:CDY14477.1
InterPro:Fumarase/histidase_N	InterPro:Fumarate_lyase_CS	InterPro:Fumarate_lyase_N	InterPro:Fumarate_lyase_fam	GO:GO:0003674	GO:GO:0003824
GO:GO:0004056	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0042450
EnsemblPlantsGene:GSBRNA2T00079160001	InterPro:IPR024083	InterPro:L-Aspartase-like	HAMAP:MF_00006	PFAM:PF00206	PFAM:PF14698
PRINTS:PR00145	PRINTS:PR00149	ScanProsite:PS00163	PANTHER:PTHR43814	MetaCyc:PWY-4983	MetaCyc:PWY-4984
MetaCyc:PWY-5	MetaCyc:PWY-5154	MetaCyc:PWY-7400	SUPFAM:SSF48557	TIGRFAMs:TIGR00838	UniPathway:UPA00068
UniParc:UPI0004EEC6A9	SEG:seg	:	:	:	:

Description

BnaC03g21180DBnaC03g21180D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FNN2]

Coordinates

chrLK032043:-:587907..590066

Molecular Weight (calculated)

51928.5 Da

IEP (calculated)

6.670

GRAVY (calculated)

-0.114

Length

467 amino acids

Sequence
(BLAST)

001: MGPLDLSLSQ SFLFFSRRSY PPSSTQPPLL CLLGKQVTVP ASTLAFNEQR QGGEAVGWKV QESVTEKVEK FTESISFDKV LYKQDIMGSK AHATMLAHQG
101: LITDGDRDII LRAALTDLIG DPSKKLHTAR SRNDQVATDF RLWCRDAIDT ILVKIKHLQT ALLHLALNNQ ALILPGYTHL QRAQPVLLPH VLLTYVEQLE
201: RDAGRYVYCR ERLNFCPLGA CALAGTGLPI DRFMTATALG FTQPMRNSID AVSDRDFVLE FLYANSNTAI HLSRLGEEWV LWASEEFGFM TPSDSVSTGS
301: SIMPQKKNPD PMELVRGKSA RVIGDLVTVL TLCKGLPLAY NRDFQEDKEP MFDSTKTIMG MVDVAAEFAH NLARSNKGMP FRSSHDVVGK LVGVCVSRGC
401: ELQNLSLEEM KKLSPVFEED VFGFLGVGNS VNKFSSYGST GSNCVAEQLG YWVNKLKITI RLFEEDW

Best Arabidopsis Sequence Match ( AT5G10920.1 )
(BLAST)

001: MGAIDLSFSQ SLLFSSSRSN LSSSTHRSVS FLPPGSKSRC LPPLRSMSHD DDTASKEVKL WGGRFEESVT EKVEKFTESI SFDKVLYKQD IMGSKAHASM
101: LAHQGLITDS DKDSILRGLD DIERQIEANK FEWRTDREDV HMNIEAALTD LIGEPAKKLH TARSRNDQVA TDFRLWCRDA IDTIIVKIRN LQRALVELAL
201: KNEALIVPGY THLQRAQPVL LPHVLLTFVE QLERDAGRYV DCRARLNFSP LGACALAGTG LPIDRFMTAN ALGFTEPMRN SIDAVSDRDF VLEFLYTNAN
301: TGIHLSRLGE EWVLWASEEF GFMTPSDSVS TGSSIMPQKK NPDPMELVRG KSARVIGDLV TVLTLCKGLP LAYNRDFQED KEPMFDSTKT IMGMIDVSAE
401: FAQNVTFNED RIKKSLPAGH LDATTLADYL VKKGMPFRSS HDIVGKLVGV CVSKGCELQN LSLEEMKKLS PVFEEDVFGF LGVENSVNKF SSYGSTGSNC
501: VAEQLGYWVN KLNITST

Arabidopsis Description

Argininosuccinate lyase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LEU8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.