CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, vacuole

Predictor Summary:

extracellular 6
endoplasmic reticulum 6
vacuole 6
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, vacuole
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69799
CDX92967
CDX94882
CDX97066
CDY14477
CDY35482
CDY67558
CDY68484
CDY69266
CDY69491
CDY69492
CDY69930
CDY70585

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34460.1	CDX92967	AT3G22942.1	11513956
AT4G34460.1	CDX94882	AT3G22942.1	11513956
AT4G34460.1	CDY35482	AT3G22942.1	11513956
AT4G34460.1	CDY67558	AT3G22942.1	11513956
AT4G34460.1	CDY68484	AT4G05420.1	18223036
AT4G34460.1	CDY69266	AT4G05420.1	18223036
AT4G34460.1	CDY69930	AT4G05420.1	18223036
AT4G34460.1	CDY70585	AT4G05420.1	18223036
AT4G34460.1	CDX69799	AT5G10920.1	21798944
AT4G34460.1	CDX97066	AT5G10920.1	21798944
AT4G34460.1	CDY14477	AT5G10920.1	21798944
AT4G34460.1	CDY69491	AT5G10920.1	21798944
AT4G34460.1	CDY69492	AT5G10920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra017658.1-P	Field mustard	cytosol	42.15	99.47
CDX72483	Canola	vacuole	95.96	96.72
CDX75436	Canola	cytosol	40.47	95.76
CDX69061	Canola	cytosol	40.25	95.23
AT4G34460.1	Thale cress	cytosol	39.24	92.84
CDX76284	Canola	cytosol	35.2	91.28
CDY46247	Canola	cytosol	35.54	91.09
VIT_03s0063g02480.t01	Wine grape	cytosol	34.64	81.96
KRH29472	Soybean	cytosol	34.19	80.9
KRH24483	Soybean	cytosol	34.08	80.64
PGSC0003DMT400001906	Potato	cytosol	33.86	80.11
Solyc01g109560.2.1	Tomato	cytosol	33.74	79.84
KRH60850	Soybean	cytosol	33.63	79.58
KRH51535	Soybean	cytosol	33.41	79.05
GSMUA_Achr10P...	Banana	cytosol	32.4	76.25
EER93689	Sorghum	cytosol, plastid	32.4	76.05
GSMUA_Achr6P31660_001	Banana	cytosol	32.17	75.73
TraesCS4A01G294000.1	Wheat	cytosol, plastid	32.17	75.53
Os03t0669200-01	Rice	plasma membrane	32.06	75.26
TraesCS4B01G019900.1	Wheat	cytosol, plastid	32.06	75.26
TraesCS4D01G017800.1	Wheat	cytosol, plastid	32.06	75.26
Zm00001d033422_P001	Maize	extracellular, mitochondrion, plasma membrane	32.06	75.26
GSMUA_Achr9P09850_001	Banana	cytosol	31.84	74.93
HORVU4Hr1G003110.2	Barley	cytosol	32.29	64.72

Protein Annotations

KEGG:00500+3.2.1.39	Gene3D:2.130.10.10	MapMan:26.8.1.1.2.2	MapMan:27.6.2.2	Gene3D:3.20.20.80	GO:A0A078I819
UniProt:A0A078I819	EnsemblPlants:CDY45313	ProteinID:CDY45313	ProteinID:CDY45313.1	ncoils:Coil	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005488	GO:GO:0005515	GO:GO:0005975
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787
EnsemblPlantsGene:GSBRNA2T00081767001	InterPro:Glyco_hydro_17	InterPro:Glycoside_hydrolase_SF	InterPro:Gprotein_B	InterPro:Guanine_nucleotide-bd_bsu	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00332	PFAM:PF00400	PFAM:PF07983	PRINTS:PR00319
PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19850	PANTHER:PTHR19850:SF48
SMART:SM00320	SMART:SM00768	SUPFAM:SSF50978	SUPFAM:SSF51445	SignalP:SignalP-noTM	UniParc:UPI0004EE63E0
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	InterPro:X8
SEG:seg	:	:	:	:	:

Description

BnaA03g52860DBnaA03g52860D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I819]

Coordinates

chrLK032620:-:66125..72112

Molecular Weight (calculated)

95310.2 Da

IEP (calculated)

6.710

GRAVY (calculated)

-0.141

Length

892 amino acids

Sequence
(BLAST)

001: MAISICFSLL LIVLSQFPSS HAEPFIGVNY GQVADNLPPP SETAKLIQST SIQKVRLYGA DPAIIKALAG TGVGIVIGTA NGDLPSLAAD PNAASQWISS
101: NVLPFYPASK IILITVGNEV LLSKDPNLVS QLLPAMQNVQ KALEAVSLGG KIKVSTVHAM SVLGSSEPPS SGSFASGYQA GLKDILQFLS DTGSPFAINP
201: YPFFAYQSDP RPETLAFCLF QPNAGRPDHN TGITYMNMFD AQYKRQLFTL DDAAAYIRAV DAVHSALKSM GFEKVEIVVA ETGWASRGDP NEVGPSVDNA
301: KAYNGNLIAH LRSMVGTPLM PGKPVDTYIF ALYDENLKSG PSSERAFGLF KTDHSMAYDV GLAKSSGSSS SNSSSQTPSG KASTGWCVSK KDATDEQLQS
401: SIDWACGQGI DCGPIQPGGA CFEPNNVASH AAFAMNMYYQ KSPKRPTDCD FSQTATITSQ NPSYNSCVYP GGGGGAGSAG VMNKYVNSDK IESKKNGAVE
501: SKVYSSLSFL LIVVMSVSEL KERHAVATET VNNLRDRLRQ RRLQLLDTDV SKYSAAQGRS PVKFGATDLV CCRTLLGHTG KVYSLDWTPE RNRIVSASQD
601: GRLIVWNALT SQKTHAIKLP CAWVMTCAFS PNGQTVACGG LDSVCSIFSL SSTADKDGTV PVSRTLSGHR GYVSCCQYVP NEDAHLITSS GDQTCVLWDV
701: TTGLKTSVFG GEFQSGHTGD VLSVSISGSN RNWFISGSCD TTACLWDTRA ASRAVRTFHG HEGDVNTVKF FPDGYRFGTG SDDGTCRLYD LRTGHQLQVY
801: HQANGDGENL PVTSIAFSAS GRLLFAGYAN NSTCYVWDTL LGEVVLDLGE LQDSHKNRIS CLGMSADGSA LCTGSWDSNL KIWAFGGHRR VT

Best Arabidopsis Sequence Match ( AT4G34480.1 )
(BLAST)

001: MALSISIYFL LIFLSHFPSS HAEPFIGVNY GQVADNLPPP SETVKLLQST SIQKVRLYGA DPAIIKALAG TGVGIVIGAA NGDVPSLASD PNAATQWINS
101: NVLPFYPASK IMLITVGNEI LMSNDPNLVN QLLPAMQNVQ KALEAVSLGG KIKVSTVNSM TVLGSSDPPS SGSFAAGYQT GLKGILQFLS DTGSPFAINP
201: YPFFAYQSDP RPETLAFCLF EPNAGRVDSK TGIKYTNMFD AQVDAVHSAL KSMGFEKVEI VVAETGWASR GDANEVGASV DNAKAYNGNL IAHLRSMVGT
301: PLMPGKPVDT YIFALYDENL KPGPSSERAF GLFKTDLSMV YDVGLAKSSS SSQTPSGKVT SSGWCVPKKG ATNEELQASL DWACGHGIDC GAIQPGGACF
401: EPNNVVSHAA YAMNMYFQKS PKQPTDCDFS KTATVTSQNP SYNNCVYPGG GGGGGGGGGG SKAVMNKYVS SDKVEKKNGA TEPKVSSSLS FLLIFLSLIF
501: HVYM

Arabidopsis Description

Glucan endo-1,3-beta-glucosidase 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9M069]
SUBAcon: [plasma membrane,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.