CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69799
CDX92967
CDX94882
CDX97066
CDY14477
CDY35482
CDY67558
CDY68484
CDY69266
CDY69491
CDY69492
CDY69930
CDY70585

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34460.1	CDX92967	AT3G22942.1	11513956
AT4G34460.1	CDX94882	AT3G22942.1	11513956
AT4G34460.1	CDY35482	AT3G22942.1	11513956
AT4G34460.1	CDY67558	AT3G22942.1	11513956
AT4G34460.1	CDY68484	AT4G05420.1	18223036
AT4G34460.1	CDY69266	AT4G05420.1	18223036
AT4G34460.1	CDY69930	AT4G05420.1	18223036
AT4G34460.1	CDY70585	AT4G05420.1	18223036
AT4G34460.1	CDX69799	AT5G10920.1	21798944
AT4G34460.1	CDX97066	AT5G10920.1	21798944
AT4G34460.1	CDY14477	AT5G10920.1	21798944
AT4G34460.1	CDY69491	AT5G10920.1	21798944
AT4G34460.1	CDY69492	AT5G10920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75436	Canola	cytosol	99.47	99.47
Bra011536.1-P	Field mustard	cytosol	99.2	99.2
AT4G34460.1	Thale cress	cytosol	94.16	94.16
CDY46247	Canola	cytosol	85.94	93.1
CDX76284	Canola	cytosol	84.62	92.73
VIT_03s0063g02480.t01	Wine grape	cytosol	83.55	83.55
PGSC0003DMT400001906	Potato	cytosol	81.7	81.7
KRH29472	Soybean	cytosol	81.7	81.7
KRH24483	Soybean	cytosol	81.43	81.43
Solyc01g109560.2.1	Tomato	cytosol	81.43	81.43
KRH60850	Soybean	cytosol	80.9	80.9
KRH51535	Soybean	cytosol	80.37	80.37
EER93689	Sorghum	cytosol, plastid	77.98	77.37
GSMUA_Achr6P31660_001	Banana	cytosol	77.19	76.78
TraesCS4A01G294000.1	Wheat	cytosol, plastid	77.19	76.58
TraesCS4B01G019900.1	Wheat	cytosol, plastid	77.19	76.58
TraesCS4D01G017800.1	Wheat	cytosol, plastid	77.19	76.58
Zm00001d033422_P001	Maize	extracellular, mitochondrion, plasma membrane	77.19	76.58
GSMUA_Achr10P...	Banana	cytosol	76.92	76.52
Os03t0669200-01	Rice	plasma membrane	76.92	76.32
GSMUA_Achr9P09850_001	Banana	cytosol	76.66	76.25
HORVU4Hr1G003110.2	Barley	cytosol	76.66	64.94
CDX72483	Canola	vacuole	95.76	40.79
CDY45313	Canola	endoplasmic reticulum, extracellular, vacuole	95.23	40.25

Protein Annotations

Gene3D:2.130.10.10	MapMan:26.8.1.1.2.2	MapMan:27.6.2.2	GO:A0A078BW83	EnsemblPlants:CDX69061	ProteinID:CDX69061
ProteinID:CDX69061.1	ncoils:Coil	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00130830001	InterPro:Gprotein_B
InterPro:Guanine_nucleotide-bd_bsu	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PIRSF:PIRSF002394
PRINTS:PR00319	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19850
PANTHER:PTHR19850:SF48	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EE8251	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:

Description

BnaC01g03920D

Coordinates

chrLK031789:-:2715693..2718337

Molecular Weight (calculated)

40948.1 Da

IEP (calculated)

7.427

GRAVY (calculated)

-0.240

Length

377 amino acids

Sequence
(BLAST)

001: MSVSELKERH AAATETVNNL RDRLRQRRLQ LLDTDVAKYS AAQGRSPVKF GATDLVCCRT LQGHTGKVYS LDWTPERNRI VSASQDGRLI VWNALTSQKT
101: HAIKLPCAWV MTCAFSPNGQ TVACGGLDSV CSIFSLSSTA DKDGTVPVSR MLSGHRGYVS CCQYVPNEDA RLITSSGDQT CVLWDVTTGL KTSVFGGEFQ
201: SGHTADVLSV SISGSNPNWF ISGSCDTTAR LWDTRAASRA VRTFHGHEGD VNTVKFFPDG NRFGTGSEDG TCRLYDIRTG HQLQVYQPHG DGENVPVTSI
301: AFSASGRLLF AGYANNNACY VWDTLLGEIV LDLGELQDSH KNRISCLGMS ADGSALCTGS WDSNLKIWAF GGHRRVI

Best Arabidopsis Sequence Match ( AT4G34460.1 )
(BLAST)

001: MSVSELKERH AVATETVNNL RDQLRQRRLQ LLDTDVARYS AAQGRTRVSF GATDLVCCRT LQGHTGKVYS LDWTPERNRI VSASQDGRLI VWNALTSQKT
101: HAIKLPCAWV MTCAFSPNGQ SVACGGLDSV CSIFSLSSTA DKDGTVPVSR MLTGHRGYVS CCQYVPNEDA HLITSSGDQT CILWDVTTGL KTSVFGGEFQ
201: SGHTADVLSV SISGSNPNWF ISGSCDSTAR LWDTRAASRA VRTFHGHEGD VNTVKFFPDG YRFGTGSDDG TCRLYDIRTG HQLQVYQPHG DGENGPVTSI
301: AFSVSGRLLF AGYASNNTCY VWDTLLGEVV LDLGLQQDSH RNRISCLGLS ADGSALCTGS WDSNLKIWAF GGHRRVI

Arabidopsis Description

GB1ELK4 [Source:UniProtKB/TrEMBL;Acc:A0A178V0Y1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.