Factsheet for TraesCS4B01G019900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1B01G473400.1
TraesCS1D01G445700.1
TraesCS3A01G210100.2
TraesCS3B01G240600.1
TraesCS4A01G119700.1
TraesCS4B01G185000.1
TraesCS4D01G186300.1
TraesCS5B01G299700.1
TraesCS5D01G307100.1
TraesCSU01G002300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34460.1	TraesCS1B01G473400.1	AT4G05420.1	18223036
AT4G34460.1	TraesCS1D01G445700.1	AT4G05420.1	18223036
AT4G34460.1	TraesCS3A01G210100.2	AT4G05420.1	18223036
AT4G34460.1	TraesCS3B01G240600.1	AT4G05420.1	18223036
AT4G34460.1	TraesCSU01G002300.1	AT4G05420.1	18223036
AT4G34460.1	TraesCS4A01G119700.1	AT5G10920.1	21798944
AT4G34460.1	TraesCS4B01G185000.1	AT5G10920.1	21798944
AT4G34460.1	TraesCS4D01G186300.1	AT5G10920.1	21798944
AT4G34460.1	TraesCS5B01G299700.1	AT5G10920.1	21798944
AT4G34460.1	TraesCS5D01G307100.1	AT5G10920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G017800.1	Wheat	cytosol, plastid	100.0	100.0
TraesCS4A01G294000.1	Wheat	cytosol, plastid	99.74	99.74
Os03t0669200-01	Rice	plasma membrane	94.74	94.74
EER93689	Sorghum	cytosol, plastid	93.42	93.42
Zm00001d033422_P001	Maize	extracellular, mitochondrion, plasma membrane	93.16	93.16
GSMUA_Achr6P31660_001	Banana	cytosol	84.74	84.96
HORVU4Hr1G003110.2	Barley	cytosol	99.21	84.72
GSMUA_Achr10P...	Banana	cytosol	83.16	83.38
GSMUA_Achr9P09850_001	Banana	cytosol	82.11	82.32
PGSC0003DMT400001906	Potato	cytosol	78.16	78.78
VIT_03s0063g02480.t01	Wine grape	cytosol	77.89	78.51
Solyc01g109560.2.1	Tomato	cytosol	77.89	78.51
KRH60850	Soybean	cytosol	77.37	77.98
KRH51535	Soybean	cytosol	77.11	77.72
KRH24483	Soybean	cytosol	76.84	77.45
KRH29472	Soybean	cytosol	76.84	77.45
CDX75436	Canola	cytosol	76.58	77.19
CDX69061	Canola	cytosol	76.58	77.19
Bra011536.1-P	Field mustard	cytosol	76.32	76.92
AT4G34460.1	Thale cress	cytosol	76.05	76.66
Bra017658.1-P	Field mustard	cytosol	75.0	75.4
Bra034628.1-P	Field mustard	cytosol	73.95	74.34
CDY46247	Canola	cytosol	67.37	73.56
CDX76284	Canola	cytosol	65.79	72.67
CDX72483	Canola	vacuole	75.26	32.32
CDY45313	Canola	endoplasmic reticulum, extracellular, vacuole	75.26	32.06

Protein Annotations

Gene3D:2.130.10.10	MapMan:26.8.1.1.2.2	MapMan:27.6.2.2	ncoils:Coil	InterPro:G-protein_beta_WD-40_rep	GO:GO:0000003
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005834	GO:GO:0005886	GO:GO:0006950	GO:GO:0007154
GO:GO:0007165	GO:GO:0007186	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009605
GO:GO:0009607	GO:GO:0009653	GO:GO:0009719	GO:GO:0009723	GO:GO:0009788	GO:GO:0009791
GO:GO:0009817	GO:GO:0009845	GO:GO:0009867	GO:GO:0009987	GO:GO:0009991	GO:GO:0010118
GO:GO:0010154	GO:GO:0016020	GO:GO:0030968	GO:GO:0048364	GO:GO:0048527	GO:GO:0050832
GO:GO:0072593	GO:GO:0080008	GO:GO:1905392	GO:GO:2000280	InterPro:Gprotein_B	InterPro:Guanine_nucleotide-bd_bsu
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PIRSF:PIRSF002394	PRINTS:PR00319
PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19850	PANTHER:PTHR19850:SF48
SMART:SM00320	SUPFAM:SSF50978	EnsemblPlantsGene:TraesCS4B01G019900	EnsemblPlants:TraesCS4B01G019900.1	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	TIGR:cd00200	SEG:seg	:

Description

No Description!

Coordinates

chr4B:-:14110754..14115548

Molecular Weight (calculated)

41719.2 Da

IEP (calculated)

7.443

GRAVY (calculated)

-0.274

Length

380 amino acids

Sequence
(BLAST)

001: MASVAELKEK HAAATASVNS LRERLRQRRQ TLLDTDVEKY SKAQGRTAVS FNPTDLVCCR TLQGHSGKVY SLDWTPEKNW IVSASQDGRL IVWNALTSQK
101: THAIKLHCPW VMTCAFAPNG QSVACGGLDS ACSIFNLSSQ ADRDGNMPVS RVLTGHKGYV SSCQYVPDQE TRLITGSGDQ TCVLWDVTTG QRISIFGGEF
201: PSGHTADVLS LSINSLNTNM FISGSCDTTV RLWDLRIASR AVRTYHGHEG DINSVKFFPD GQRFGTGSDD GTCRLFDMRT GHQLQVYNRE PDRNDNELPI
301: VTSVAFSISG RLLFAGYSNG DCYVWDTLLA EMVLNLGTLQ NSHEGRISCL GLSSDGSALC TGSWDKNLKI WAFSGHRKIV

Best Arabidopsis Sequence Match ( AT4G34460.1 )
(BLAST)

001: MSVSELKERH AVATETVNNL RDQLRQRRLQ LLDTDVARYS AAQGRTRVSF GATDLVCCRT LQGHTGKVYS LDWTPERNRI VSASQDGRLI VWNALTSQKT
101: HAIKLPCAWV MTCAFSPNGQ SVACGGLDSV CSIFSLSSTA DKDGTVPVSR MLTGHRGYVS CCQYVPNEDA HLITSSGDQT CILWDVTTGL KTSVFGGEFQ
201: SGHTADVLSV SISGSNPNWF ISGSCDSTAR LWDTRAASRA VRTFHGHEGD VNTVKFFPDG YRFGTGSDDG TCRLYDIRTG HQLQVYQPHG DGENGPVTSI
301: AFSVSGRLLF AGYASNNTCY VWDTLLGEVV LDLGLQQDSH RNRISCLGLS ADGSALCTGS WDSNLKIWAF GGHRRVI

Arabidopsis Description

GB1ELK4 [Source:UniProtKB/TrEMBL;Acc:A0A178V0Y1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.