Factsheet for VIT_03s0063g02480.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 2
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_05s0020g04450.t01
VIT_10s0003g04360.t01
VIT_18s0001g07590.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34460.1	VIT_05s0020g04450.t01	AT3G22942.1	11513956
AT4G34460.1	VIT_10s0003g04360.t01	AT4G05420.1	18223036
AT4G34460.1	VIT_18s0001g07590.t01	AT5G10920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH60850	Soybean	cytosol	90.98	90.98
KRH51535	Soybean	cytosol	90.45	90.45
PGSC0003DMT400001906	Potato	cytosol	90.19	90.19
Solyc01g109560.2.1	Tomato	cytosol	89.92	89.92
KRH29472	Soybean	cytosol	89.66	89.66
KRH24483	Soybean	cytosol	89.12	89.12
Bra011536.1-P	Field mustard	cytosol	83.55	83.55
CDX75436	Canola	cytosol	83.55	83.55
CDX69061	Canola	cytosol	83.55	83.55
AT4G34460.1	Thale cress	cytosol	82.49	82.49
Bra017658.1-P	Field mustard	cytosol	81.7	81.48
GSMUA_Achr6P31660_001	Banana	cytosol	81.7	81.27
Bra034628.1-P	Field mustard	cytosol	81.17	80.95
GSMUA_Achr10P...	Banana	cytosol	81.17	80.74
Os03t0669200-01	Rice	plasma membrane	80.9	80.26
CDY46247	Canola	cytosol	74.01	80.17
GSMUA_Achr9P09850_001	Banana	cytosol	80.37	79.95
CDX76284	Canola	cytosol	72.94	79.94
EER93689	Sorghum	cytosol, plastid	80.37	79.74
Zm00001d033422_P001	Maize	extracellular, mitochondrion, plasma membrane	79.84	79.21
TraesCS4A01G294000.1	Wheat	cytosol, plastid	78.78	78.16
TraesCS4B01G019900.1	Wheat	cytosol, plastid	78.51	77.89
TraesCS4D01G017800.1	Wheat	cytosol, plastid	78.51	77.89
HORVU4Hr1G003110.2	Barley	cytosol	79.05	66.97
CDX72483	Canola	vacuole	82.49	35.14
CDY45313	Canola	endoplasmic reticulum, extracellular, vacuole	81.96	34.64

Protein Annotations

EntrezGene:100853292	wikigene:100853292	Gene3D:2.130.10.10	MapMan:26.8.1.1.2.2	MapMan:27.6.2.2	EMBL:AM429393
ProteinID:CAN73515	ProteinID:CAN73515.1	ProteinID:CBI32581	ProteinID:CBI32581.3	ncoils:Coil	UniProt:D7TQ08
EMBL:FN596006	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005623	GO:GO:0005886	GO:GO:0007154	GO:GO:0007165	GO:GO:0007186	GO:GO:0008150
GO:GO:0009987	GO:GO:0016020	InterPro:Gprotein_B	InterPro:Guanine_nucleotide-bd_bsu	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	EntrezGene:LOC100853292	wikigene:LOC100853292	PFAM:PF00400	PIRSF:PIRSF002394	PRINTS:PR00319
PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19850	PANTHER:PTHR19850:SF48
SMART:SM00320	SUPFAM:SSF50978	TIGR:TC53575	TIGR:TC60476	UniParc:UPI0001982E1B	ArrayExpress:VIT_03s0063g02480
EnsemblPlantsGene:VIT_03s0063g02480	EnsemblPlants:VIT_03s0063g02480.t01	unigene:Vvi.5573	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_003631647	RefSeq:XP_003631647.1	SEG:seg	:

Description

No Description!

Coordinates

chr3:-:5692422..5706978

Molecular Weight (calculated)

40927.2 Da

IEP (calculated)

7.292

GRAVY (calculated)

-0.202

Length

377 amino acids

Sequence
(BLAST)

001: MSVAELKERH MAATETVNSL RERLKQKRLL LLDTDVAGYA RAQGKSPVTF GPTDLVCCRT LQGHTGKVYS LDWTTEKNRI VSASQDGRLI VWNALTSQKT
101: HAIKLPCAWV MTCAFSPSGQ SVACGGLDSV CSIFNLNSPT DKDGNLAMSK MLSGHKGYVS SCQYVPDEDT HLITSSGDQT CVLWDITTGL RTSVFGGEFQ
201: SGHTADVLSV SISGSNSRMF VSGSCDATAR LWDTRAASRA VRTFHGHEGD VNTVRFFPDG NRFGTGSDDG TCRLFDIRTG HQLQVYYQEH GDNEAPHVTS
301: IAFSISGRLL FAGYSNGDCY VWDTLLAKVV LNLGSLQNSH DSRISCLGLS ADGSALCTGS WDTNLKIWAF GGHRRVI

Best Arabidopsis Sequence Match ( AT4G34460.1 )
(BLAST)

001: MSVSELKERH AVATETVNNL RDQLRQRRLQ LLDTDVARYS AAQGRTRVSF GATDLVCCRT LQGHTGKVYS LDWTPERNRI VSASQDGRLI VWNALTSQKT
101: HAIKLPCAWV MTCAFSPNGQ SVACGGLDSV CSIFSLSSTA DKDGTVPVSR MLTGHRGYVS CCQYVPNEDA HLITSSGDQT CILWDVTTGL KTSVFGGEFQ
201: SGHTADVLSV SISGSNPNWF ISGSCDSTAR LWDTRAASRA VRTFHGHEGD VNTVKFFPDG YRFGTGSDDG TCRLYDIRTG HQLQVYQPHG DGENGPVTSI
301: AFSVSGRLLF AGYASNNTCY VWDTLLGEVV LDLGLQQDSH RNRISCLGLS ADGSALCTGS WDSNLKIWAF GGHRRVI

Arabidopsis Description

GB1ELK4 [Source:UniProtKB/TrEMBL;Acc:A0A178V0Y1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.