CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 2
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92444
KRH25071
KRH34355
KRH43086
KRH52951
KRH59212
KRH59213
KRH62224

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34460.1	KRG92444	AT3G22942.1	11513956
AT4G34460.1	KRH34355	AT3G22942.1	11513956
AT4G34460.1	KRH25071	AT4G05420.1	18223036
AT4G34460.1	KRH43086	AT4G05420.1	18223036
AT4G34460.1	KRH59212	AT4G05420.1	18223036
AT4G34460.1	KRH59213	AT4G05420.1	18223036
AT4G34460.1	KRH52951	AT5G10920.1	21798944
AT4G34460.1	KRH62224	AT5G10920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29472	Soybean	cytosol	98.94	98.94
KRH60850	Soybean	cytosol	89.92	89.92
KRH51535	Soybean	cytosol	89.39	89.39
VIT_03s0063g02480.t01	Wine grape	cytosol	89.12	89.12
PGSC0003DMT400001906	Potato	cytosol	86.47	86.47
Solyc01g109560.2.1	Tomato	cytosol	86.21	86.21
Bra011536.1-P	Field mustard	cytosol	81.43	81.43
CDX69061	Canola	cytosol	81.43	81.43
CDX75436	Canola	cytosol	81.43	81.43
AT4G34460.1	Thale cress	cytosol	80.64	80.64
GSMUA_Achr10P...	Banana	cytosol	80.9	80.47
Bra017658.1-P	Field mustard	cytosol	80.37	80.16
CDX76284	Canola	cytosol	72.15	79.07
Os03t0669200-01	Rice	plasma membrane	79.58	78.95
Bra034628.1-P	Field mustard	cytosol	79.05	78.84
CDY46247	Canola	cytosol	72.41	78.45
GSMUA_Achr6P31660_001	Banana	cytosol	77.98	77.57
EER93689	Sorghum	cytosol, plastid	77.98	77.37
TraesCS4A01G294000.1	Wheat	cytosol, plastid	77.72	77.11
Zm00001d033422_P001	Maize	extracellular, mitochondrion, plasma membrane	77.45	76.84
TraesCS4D01G017800.1	Wheat	cytosol, plastid	77.45	76.84
TraesCS4B01G019900.1	Wheat	cytosol, plastid	77.45	76.84
GSMUA_Achr9P09850_001	Banana	cytosol	76.66	76.25
HORVU4Hr1G003110.2	Barley	cytosol	77.98	66.07
CDX72483	Canola	vacuole	80.11	34.12
CDY45313	Canola	endoplasmic reticulum, extracellular, vacuole	80.64	34.08

Protein Annotations

EntrezGene:100787237	Gene3D:2.130.10.10	MapMan:26.8.1.1.2.2	MapMan:27.6.2.2	EMBL:ACUP02007176	ncoils:Coil
InterPro:G-protein_beta_WD-40_rep	EnsemblPlantsGene:GLYMA_12G043900	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	InterPro:Gprotein_B	InterPro:Guanine_nucleotide-bd_bsu	UniProt:I1LQ45
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EnsemblPlants:KRH24483	ProteinID:KRH24483	ProteinID:KRH24483.1
PFAM:PF00400	PIRSF:PIRSF002394	PRINTS:PR00319	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR19850	PANTHER:PTHR19850:SF48	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0001BA6131
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:

Description

hypothetical protein

Coordinates

chr12:+:3183449..3187542

Molecular Weight (calculated)

41023.1 Da

IEP (calculated)

7.292

GRAVY (calculated)

-0.255

Length

377 amino acids

Sequence
(BLAST)

001: MSVTELKERH SAATDTVNNL RHRLKQKRLS LLDTDVSGYA RSQGRTPVTF GPTDLVCCRT LQGHTGKVYS LDWTSEKSQI VSASQDGRLI VWNALTRQKI
101: HAIKLPCAWV MTCAFSPTGQ SVACGGLDSV CSIFNLNSPT DKDGNLPVSR MLSGHKGYVS SCQYVPDEDT HLITGSGDQT CVLWDITTGL KTSIFGGEFQ
201: SGHTADVLSI SINGSNSRMF VSGSCDATAR LWDTRVASRA VRTFHGHEGD VNAVKFFPDG NRFGTGSDDG TCRLFDIRTG HQLQVYYQQH SDNDITPVTS
301: IAFSASGRLL FAGYTNGDCY VWDTLLAKVV LNIGSLQDSH EDRISCLGLS ADGSALCTGS WDTNLKIWAF GGHRRTT

Best Arabidopsis Sequence Match ( AT4G34460.1 )
(BLAST)

001: MSVSELKERH AVATETVNNL RDQLRQRRLQ LLDTDVARYS AAQGRTRVSF GATDLVCCRT LQGHTGKVYS LDWTPERNRI VSASQDGRLI VWNALTSQKT
101: HAIKLPCAWV MTCAFSPNGQ SVACGGLDSV CSIFSLSSTA DKDGTVPVSR MLTGHRGYVS CCQYVPNEDA HLITSSGDQT CILWDVTTGL KTSVFGGEFQ
201: SGHTADVLSV SISGSNPNWF ISGSCDSTAR LWDTRAASRA VRTFHGHEGD VNTVKFFPDG YRFGTGSDDG TCRLYDIRTG HQLQVYQPHG DGENGPVTSI
301: AFSVSGRLLF AGYASNNTCY VWDTLLGEVV LDLGLQQDSH RNRISCLGLS ADGSALCTGS WDSNLKIWAF GGHRRVI

Arabidopsis Description

GB1ELK4 [Source:UniProtKB/TrEMBL;Acc:A0A178V0Y1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.