CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 2
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92444
KRH25071
KRH34355
KRH43086
KRH52951
KRH59212
KRH59213
KRH62224

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34460.1	KRG92444	AT3G22942.1	11513956
AT4G34460.1	KRH34355	AT3G22942.1	11513956
AT4G34460.1	KRH25071	AT4G05420.1	18223036
AT4G34460.1	KRH43086	AT4G05420.1	18223036
AT4G34460.1	KRH59212	AT4G05420.1	18223036
AT4G34460.1	KRH59213	AT4G05420.1	18223036
AT4G34460.1	KRH52951	AT5G10920.1	21798944
AT4G34460.1	KRH62224	AT5G10920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH60850	Soybean	cytosol	95.76	95.76
VIT_03s0063g02480.t01	Wine grape	cytosol	90.45	90.45
KRH29472	Soybean	cytosol	90.19	90.19
KRH24483	Soybean	cytosol	89.39	89.39
PGSC0003DMT400001906	Potato	cytosol	85.68	85.68
Solyc01g109560.2.1	Tomato	cytosol	85.41	85.41
Bra011536.1-P	Field mustard	cytosol	80.37	80.37
CDX69061	Canola	cytosol	80.37	80.37
CDX75436	Canola	cytosol	80.37	80.37
AT4G34460.1	Thale cress	cytosol	79.84	79.84
GSMUA_Achr10P...	Banana	cytosol	80.11	79.68
GSMUA_Achr6P31660_001	Banana	cytosol	79.58	79.16
Os03t0669200-01	Rice	plasma membrane	79.58	78.95
GSMUA_Achr9P09850_001	Banana	cytosol	79.05	78.63
Bra017658.1-P	Field mustard	cytosol	78.78	78.57
EER93689	Sorghum	cytosol, plastid	78.78	78.16
Bra034628.1-P	Field mustard	cytosol	78.25	78.04
Zm00001d033422_P001	Maize	extracellular, mitochondrion, plasma membrane	78.25	77.63
TraesCS4A01G294000.1	Wheat	cytosol, plastid	77.98	77.37
TraesCS4B01G019900.1	Wheat	cytosol, plastid	77.72	77.11
TraesCS4D01G017800.1	Wheat	cytosol, plastid	77.72	77.11
CDX76284	Canola	cytosol	70.29	77.03
CDY46247	Canola	cytosol	71.09	77.01
HORVU4Hr1G003110.2	Barley	cytosol	77.98	66.07
CDX72483	Canola	vacuole	79.58	33.9
CDY45313	Canola	endoplasmic reticulum, extracellular, vacuole	79.05	33.41

Protein Annotations

EntrezGene:100782117	Gene3D:2.130.10.10	MapMan:26.8.1.1.2.2	MapMan:27.6.2.2	EMBL:ACUP02003380	ncoils:Coil
InterPro:G-protein_beta_WD-40_rep	EnsemblPlantsGene:GLYMA_06G013000	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	InterPro:Gprotein_B	InterPro:Guanine_nucleotide-bd_bsu	UniProt:I1K777
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EnsemblPlants:KRH51535	ProteinID:KRH51535	ProteinID:KRH51535.1
ProteinID:KRH51536.1	ProteinID:KRH51537.1	PFAM:PF00400	PIRSF:PIRSF002394	PRINTS:PR00319	PRINTS:PR00320
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19850	PANTHER:PTHR19850:SF48	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI0002339BB8	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:966714..973712

Molecular Weight (calculated)

41037.2 Da

IEP (calculated)

7.293

GRAVY (calculated)

-0.206

Length

377 amino acids

Sequence
(BLAST)

001: MSVTELKERH LAATETINSL RERLKERRLS LLDTDIAGYA RSQGRAPVTF GPTDLVCCRA LQGHTGKVYS LDWTSEKNRI VSASQDGRLI VWNALTSQKT
101: HAIKLPCAWV MTCAFSPTGQ SVACGGLDSV CSIFNLNSPA DRDGNLAVSQ MLSGHKGYVS SCQYVPDEDT HLVTGSGDQT CVLWDITTGF RTSVFGGEFQ
201: SGHTADVLSI SINGSNSRMF VSGSCDSTAR LWDTRVASRA VRTFHGHRGD VNTVKFFPDG NRFGTGSDDG TCRLFDIRTG HQLQVYHQQH GDNEAAHVTS
301: IAFSISGRLL FAGYTNGDCY VWDTLLAKVV LNLGSLQNTH EDRISCLGLS ADGSALCTGS WDTNIKIWAF GGYRRVV

Best Arabidopsis Sequence Match ( AT4G34460.1 )
(BLAST)

001: MSVSELKERH AVATETVNNL RDQLRQRRLQ LLDTDVARYS AAQGRTRVSF GATDLVCCRT LQGHTGKVYS LDWTPERNRI VSASQDGRLI VWNALTSQKT
101: HAIKLPCAWV MTCAFSPNGQ SVACGGLDSV CSIFSLSSTA DKDGTVPVSR MLTGHRGYVS CCQYVPNEDA HLITSSGDQT CILWDVTTGL KTSVFGGEFQ
201: SGHTADVLSV SISGSNPNWF ISGSCDSTAR LWDTRAASRA VRTFHGHEGD VNTVKFFPDG YRFGTGSDDG TCRLYDIRTG HQLQVYQPHG DGENGPVTSI
301: AFSVSGRLLF AGYASNNTCY VWDTLLGEVV LDLGLQQDSH RNRISCLGLS ADGSALCTGS WDSNLKIWAF GGHRRVI

Arabidopsis Description

GB1ELK4 [Source:UniProtKB/TrEMBL;Acc:A0A178V0Y1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.