CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69799
CDX92967
CDX94882
CDX97066
CDY14477
CDY35482
CDY67558
CDY68484
CDY69266
CDY69491
CDY69492
CDY69930
CDY70585

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34460.1	CDX92967	AT3G22942.1	11513956
AT4G34460.1	CDX94882	AT3G22942.1	11513956
AT4G34460.1	CDY35482	AT3G22942.1	11513956
AT4G34460.1	CDY67558	AT3G22942.1	11513956
AT4G34460.1	CDY68484	AT4G05420.1	18223036
AT4G34460.1	CDY69266	AT4G05420.1	18223036
AT4G34460.1	CDY69930	AT4G05420.1	18223036
AT4G34460.1	CDY70585	AT4G05420.1	18223036
AT4G34460.1	CDX69799	AT5G10920.1	21798944
AT4G34460.1	CDX97066	AT5G10920.1	21798944
AT4G34460.1	CDY14477	AT5G10920.1	21798944
AT4G34460.1	CDY69491	AT5G10920.1	21798944
AT4G34460.1	CDY69492	AT5G10920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46247	Canola	cytosol	97.67	96.55
Bra034628.1-P	Field mustard	cytosol	98.55	89.68
CDX69061	Canola	cytosol	92.73	84.62
CDX75436	Canola	cytosol	92.73	84.62
AT4G34460.1	Thale cress	cytosol	89.53	81.7
VIT_03s0063g02480.t01	Wine grape	cytosol	79.94	72.94
PGSC0003DMT400001906	Potato	cytosol	79.65	72.68
Solyc01g109560.2.1	Tomato	cytosol	79.36	72.41
KRH29472	Soybean	cytosol	79.36	72.41
KRH24483	Soybean	cytosol	79.07	72.15
KRH60850	Soybean	cytosol	77.91	71.09
KRH51535	Soybean	cytosol	77.03	70.29
GSMUA_Achr6P31660_001	Banana	cytosol	75.0	68.07
GSMUA_Achr10P...	Banana	cytosol	74.42	67.55
EER93689	Sorghum	cytosol, plastid	74.42	67.37
GSMUA_Achr9P09850_001	Banana	cytosol	74.13	67.28
Zm00001d033422_P001	Maize	extracellular, mitochondrion, plasma membrane	73.84	66.84
Os03t0669200-01	Rice	plasma membrane	72.97	66.05
TraesCS4A01G294000.1	Wheat	cytosol, plastid	72.97	66.05
TraesCS4B01G019900.1	Wheat	cytosol, plastid	72.67	65.79
TraesCS4D01G017800.1	Wheat	cytosol, plastid	72.67	65.79
HORVU4Hr1G003110.2	Barley	cytosol	72.38	55.96
CDX72483	Canola	vacuole	92.15	35.82
CDY45313	Canola	endoplasmic reticulum, extracellular, vacuole	91.28	35.2

Protein Annotations

Gene3D:2.130.10.10	MapMan:26.8.1.1.2.2	MapMan:27.6.2.2	GO:A0A078CJQ6	EnsemblPlants:CDX76284	ProteinID:CDX76284
ProteinID:CDX76284.1	ncoils:Coil	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00126648001	InterPro:Gprotein_B
InterPro:Guanine_nucleotide-bd_bsu	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PIRSF:PIRSF002394
PRINTS:PR00319	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19850
PANTHER:PTHR19850:SF48	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EF1297	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:	:

Description

BnaA08g11160D

Coordinates

chrLK031807:-:137557..139792

Molecular Weight (calculated)

37222.6 Da

IEP (calculated)

6.922

GRAVY (calculated)

-0.261

Length

344 amino acids

Sequence
(BLAST)

001: MSVSELKERH AVATDTVNNL RDKLIQRRLQ LLDTDVAKYT AGQGRSPVKF GATDLVCCRT LQGHTGKVHS LDWTPESNRI VSASQDGRLI TVACGGLLES
101: VCSIFSLSST ADKDGTVPVS RMLSGHKGYV SCCRYVPNED AHLITSSGDQ TCVLWDVTTG LKTSVFGGEF QSGHTADVLS VSISESNPTR FISGSCDTTA
201: RLWDTRDASR AVGTFHGHKG DVNTVKFFPD GHRFGTGSED GTCRLYDIRT GHQLQVYQPQ GDGENLPVTS IAFSASGRLL FAGYANNNTC YVWDTVVLDL
301: GELQDSHKNR ISCLGMSADG SALCTGSWDS NLKIWAFGGH RRVI

Best Arabidopsis Sequence Match ( AT4G34460.1 )
(BLAST)

001: MSVSELKERH AVATETVNNL RDQLRQRRLQ LLDTDVARYS AAQGRTRVSF GATDLVCCRT LQGHTGKVYS LDWTPERNRI VSASQDGRLI VWNALTSQKT
101: HAIKLPCAWV MTCAFSPNGQ SVACGGLDSV CSIFSLSSTA DKDGTVPVSR MLTGHRGYVS CCQYVPNEDA HLITSSGDQT CILWDVTTGL KTSVFGGEFQ
201: SGHTADVLSV SISGSNPNWF ISGSCDSTAR LWDTRAASRA VRTFHGHEGD VNTVKFFPDG YRFGTGSDDG TCRLYDIRTG HQLQVYQPHG DGENGPVTSI
301: AFSVSGRLLF AGYASNNTCY VWDTLLGEVV LDLGLQQDSH RNRISCLGLS ADGSALCTGS WDSNLKIWAF GGHRRVI

Arabidopsis Description

GB1ELK4 [Source:UniProtKB/TrEMBL;Acc:A0A178V0Y1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.