Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra023782.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDY67558 | Canola | nucleus | 96.04 | 97.0 |
| AT3G22942.1 | Thale cress | cytosol, nucleus, plastid | 89.11 | 90.0 |
| CDX92967 | Canola | nucleus | 89.11 | 89.11 |
| CDX94882 | Canola | nucleus | 89.11 | 89.11 |
| KRG92444 | Soybean | nucleus | 61.39 | 58.49 |
| PGSC0003DMT400015571 | Potato | cytosol, mitochondrion, nucleus, plastid | 56.44 | 57.58 |
| Solyc09g082940.2.1 | Tomato | cytosol, mitochondrion, nucleus, plastid | 56.44 | 57.58 |
| KRH34355 | Soybean | nucleus | 59.41 | 56.6 |
| PGSC0003DMT400041948 | Potato | cytosol, mitochondrion, nucleus | 48.51 | 53.26 |
| CDY11472 | Canola | cytosol | 46.53 | 52.81 |
| CDY53713 | Canola | cytosol | 47.52 | 51.61 |
| CDX76696 | Canola | cytosol | 44.55 | 50.56 |
| VIT_05s0020g04450.t01 | Wine grape | plastid | 52.48 | 50.48 |
| CDX93908 | Canola | extracellular | 46.53 | 31.13 |
Protein Annotations
| MapMan:26.8.1.1.2.3 | MapMan:27.6.2.3 | GO:A0A078HCH3 | UniProt:A0A078HCH3 | EnsemblPlants:CDY35482 | ProteinID:CDY35482 |
| ProteinID:CDY35482.1 | ncoils:Coil | InterPro:G-protein_gamma-like_dom | GO:GO:0003674 | GO:GO:0004871 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005834 | GO:GO:0005886 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0007186 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 | EnsemblPlantsGene:GSBRNA2T00058512001 | InterPro:IPR015898 |
| PFAM:PF00631 | PANTHER:PTHR32378 | PANTHER:PTHR32378:SF10 | SMART:SM01224 | UniParc:UPI0002543F83 | SEG:seg |
Description
BnaA01g24300DBnaA01g24300D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HCH3]
Coordinates
chrLK032353:+:16219..17308
Molecular Weight (calculated)
11458.6 Da
IEP (calculated)
5.751
GRAVY (calculated)
-0.674
Length
101 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVGSSNSSG QQLSGRVVDT RGKHRIHAQL NRLQQEARFL EEELEQLEKM DKASASCKEF LDSVDSKPDP LLPLTIGPVN ATWDQWFERP KEAKRCGCFI
101: L
101: L
1: MEAGSSNSSG QLSGRVVDTR GKHRIQAELK RLEQEARFLE EELEQLEKMD NASASCKEFL DSVDSKPDPL LPETTGPVNA TWDQWFEGPK EAKRCGCSIL
Arabidopsis Description
GG2AtGG2 [Source:UniProtKB/TrEMBL;Acc:A0A178V974]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.