Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400001906 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G22942.1 | PGSC0003DMT400001906 | AT4G34460.1 | 11513956 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400015571 | Potato | cytosol, mitochondrion, nucleus, plastid | 75.0 | 69.7 |
| KRH34355 | Soybean | nucleus | 64.13 | 55.66 |
| KRG92444 | Soybean | nucleus | 63.04 | 54.72 |
| VIT_05s0020g04450.t01 | Wine grape | plastid | 61.96 | 54.29 |
| Bra001894.1-P | Field mustard | nucleus | 57.61 | 52.48 |
| CDX92967 | Canola | nucleus | 57.61 | 52.48 |
| CDX94882 | Canola | nucleus | 57.61 | 52.48 |
| AT3G22942.1 | Thale cress | cytosol, nucleus, plastid | 55.43 | 51.0 |
| CDY67558 | Canola | nucleus | 53.26 | 49.0 |
| Bra023782.1-P | Field mustard | nucleus | 53.26 | 48.51 |
| CDY35482 | Canola | nucleus | 53.26 | 48.51 |
| PGSC0003DMT400082780 | Potato | cytosol | 42.39 | 30.95 |
Protein Annotations
| EntrezGene:102584954 | MapMan:26.8.1.1.2.3 | MapMan:27.6.2.3 | ncoils:Coil | InterPro:G-protein_gamma-like_dom | GO:GO:0003674 |
| GO:GO:0004871 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005834 | GO:GO:0005886 |
| GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007186 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 |
| InterPro:IPR015898 | UniProt:M1BC89 | PFAM:PF00631 | EnsemblPlantsGene:PGSC0003DMG401016272 | PGSC:PGSC0003DMG401016272 | EnsemblPlants:PGSC0003DMT400041948 |
| PANTHER:PTHR35129 | PANTHER:PTHR35129:SF2 | SMART:SM01224 | UniParc:UPI0002967C10 | RefSeq:XP_006350656.1 | SEG:seg |
Description
GTP binding protein gamma subunit [Source:PGSC_GENE;Acc:PGSC0003DMG401016272]
Coordinates
chr6:-:40153034..40157190
Molecular Weight (calculated)
10662.8 Da
IEP (calculated)
5.900
GRAVY (calculated)
-0.720
Length
92 amino acids
Sequence
(BLAST)
(BLAST)
1: MQSEQVESND KRGKHRILAE LKRLDQQIRF LQEELELLGK LEKASAACKE MLNKVETRPD PLLPATNGPA NPSWDRWFEG LNDIAGCRCW IW
1: MEAGSSNSSG QLSGRVVDTR GKHRIQAELK RLEQEARFLE EELEQLEKMD NASASCKEFL DSVDSKPDPL LPETTGPVNA TWDQWFEGPK EAKRCGCSIL
Arabidopsis Description
GG2AtGG2 [Source:UniProtKB/TrEMBL;Acc:A0A178V974]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.