Factsheet for Solyc01g109560.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
endoplasmic reticulum 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g021650.2.1
Solyc04g076320.2.1
Solyc09g082940.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34460.1	Solyc09g082940.2.1	AT3G22942.1	11513956
AT4G34460.1	Solyc02g021650.2.1	AT4G05420.1	18223036
AT4G34460.1	Solyc04g076320.2.1	AT5G10920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400001906	Potato	cytosol	99.73	99.73
VIT_03s0063g02480.t01	Wine grape	cytosol	89.92	89.92
KRH29472	Soybean	cytosol	86.21	86.21
KRH24483	Soybean	cytosol	86.21	86.21
KRH60850	Soybean	cytosol	85.68	85.68
KRH51535	Soybean	cytosol	85.41	85.41
Bra011536.1-P	Field mustard	cytosol	81.43	81.43
CDX69061	Canola	cytosol	81.43	81.43
CDX75436	Canola	cytosol	81.43	81.43
AT4G34460.1	Thale cress	cytosol	81.17	81.17
GSMUA_Achr10P...	Banana	cytosol	81.17	80.74
GSMUA_Achr6P31660_001	Banana	cytosol	80.11	79.68
Bra017658.1-P	Field mustard	cytosol	79.84	79.63
Bra034628.1-P	Field mustard	cytosol	79.58	79.37
CDX76284	Canola	cytosol	72.41	79.36
Os03t0669200-01	Rice	plasma membrane	79.58	78.95
EER93689	Sorghum	cytosol, plastid	79.31	78.68
CDY46247	Canola	cytosol	72.15	78.16
TraesCS4A01G294000.1	Wheat	cytosol, plastid	78.78	78.16
Zm00001d033422_P001	Maize	extracellular, mitochondrion, plasma membrane	78.78	78.16
TraesCS4B01G019900.1	Wheat	cytosol, plastid	78.51	77.89
TraesCS4D01G017800.1	Wheat	cytosol, plastid	78.51	77.89
GSMUA_Achr9P09850_001	Banana	cytosol	78.25	77.84
HORVU4Hr1G003110.2	Barley	cytosol	79.05	66.97
CDX72483	Canola	vacuole	80.37	34.24
CDY45313	Canola	endoplasmic reticulum, extracellular, vacuole	79.84	33.74

Protein Annotations

Gene3D:2.130.10.10	MapMan:26.8.1.1.2.2	MapMan:27.6.2.2	ncoils:Coil	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0007154
GO:GO:0007165	GO:GO:0007186	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	InterPro:Gprotein_B
InterPro:Guanine_nucleotide-bd_bsu	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:K4B3G9	PFAM:PF00400
PIRSF:PIRSF002394	PRINTS:PR00319	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR19850	PANTHER:PTHR19850:SF48	SMART:SM00320	SUPFAM:SSF50978	EnsemblPlantsGene:Solyc01g109560.2	EnsemblPlants:Solyc01g109560.2.1
UniParc:UPI00027689D8	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1:-:96469808..96475677

Molecular Weight (calculated)

41043.4 Da

IEP (calculated)

7.500

GRAVY (calculated)

-0.225

Length

377 amino acids

Sequence
(BLAST)

001: MSVAELKERH MAATQTVNDL REKLKQKRLQ LLDTDVSGYA KTQGKTPVTF GPTDLVCCRI LQGHTGKVYS LDWTPEKNRI VSASQDGRLI VWNALTSQKT
101: HAIKLPCAWV MTCAFSPSGQ SVACGGLDSA CSIFNLNSPI DKDGIHPVSR MLSGHKGYVS SCQYVPDEDT HLITSSGDQT CVLWDITTGL RTSVFGGEFQ
201: SGHTADVLSV SISSSNPRLF VSGSCDTTAR LWDTRVASRA QRTFHGHESD VNTVKFFPDG NRFGTGSDDG SCRLFDIRTG HQLQVYNQPH GDGDIPHVTS
301: MAFSISGRLL FVGYSNGDCY VWDTLLAKVV LNLRSVQNSH EGRISCLGLS ADGSALCTGS WDTNLKIWAF GGHRSVI

Best Arabidopsis Sequence Match ( AT4G34460.1 )
(BLAST)

001: MSVSELKERH AVATETVNNL RDQLRQRRLQ LLDTDVARYS AAQGRTRVSF GATDLVCCRT LQGHTGKVYS LDWTPERNRI VSASQDGRLI VWNALTSQKT
101: HAIKLPCAWV MTCAFSPNGQ SVACGGLDSV CSIFSLSSTA DKDGTVPVSR MLTGHRGYVS CCQYVPNEDA HLITSSGDQT CILWDVTTGL KTSVFGGEFQ
201: SGHTADVLSV SISGSNPNWF ISGSCDSTAR LWDTRAASRA VRTFHGHEGD VNTVKFFPDG YRFGTGSDDG TCRLYDIRTG HQLQVYQPHG DGENGPVTSI
301: AFSVSGRLLF AGYASNNTCY VWDTLLGEVV LDLGLQQDSH RNRISCLGLS ADGSALCTGS WDSNLKIWAF GGHRRVI

Arabidopsis Description

GB1ELK4 [Source:UniProtKB/TrEMBL;Acc:A0A178V0Y1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.