CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 2
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92444
KRH25071
KRH34355
KRH43086
KRH52951
KRH59212
KRH59213
KRH62224

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34460.1	KRG92444	AT3G22942.1	11513956
AT4G34460.1	KRH34355	AT3G22942.1	11513956
AT4G34460.1	KRH25071	AT4G05420.1	18223036
AT4G34460.1	KRH43086	AT4G05420.1	18223036
AT4G34460.1	KRH59212	AT4G05420.1	18223036
AT4G34460.1	KRH59213	AT4G05420.1	18223036
AT4G34460.1	KRH52951	AT5G10920.1	21798944
AT4G34460.1	KRH62224	AT5G10920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH51535	Soybean	cytosol	95.76	95.76
VIT_03s0063g02480.t01	Wine grape	cytosol	90.98	90.98
KRH29472	Soybean	cytosol	90.72	90.72
KRH24483	Soybean	cytosol	89.92	89.92
PGSC0003DMT400001906	Potato	cytosol	85.94	85.94
Solyc01g109560.2.1	Tomato	cytosol	85.68	85.68
Bra011536.1-P	Field mustard	cytosol	80.9	80.9
CDX69061	Canola	cytosol	80.9	80.9
CDX75436	Canola	cytosol	80.9	80.9
GSMUA_Achr6P31660_001	Banana	cytosol	80.64	80.21
AT4G34460.1	Thale cress	cytosol	80.11	80.11
GSMUA_Achr10P...	Banana	cytosol	80.37	79.95
Os03t0669200-01	Rice	plasma membrane	79.84	79.21
GSMUA_Achr9P09850_001	Banana	cytosol	79.58	79.16
Bra034628.1-P	Field mustard	cytosol	79.31	79.1
Bra017658.1-P	Field mustard	cytosol	79.31	79.1
EER93689	Sorghum	cytosol, plastid	79.05	78.42
CDX76284	Canola	cytosol	71.09	77.91
Zm00001d033422_P001	Maize	extracellular, mitochondrion, plasma membrane	78.51	77.89
CDY46247	Canola	cytosol	71.88	77.87
TraesCS4A01G294000.1	Wheat	cytosol, plastid	78.25	77.63
TraesCS4B01G019900.1	Wheat	cytosol, plastid	77.98	77.37
TraesCS4D01G017800.1	Wheat	cytosol, plastid	77.98	77.37
HORVU4Hr1G003110.2	Barley	cytosol	78.51	66.52
CDX72483	Canola	vacuole	80.11	34.12
CDY45313	Canola	endoplasmic reticulum, extracellular, vacuole	79.58	33.63

Protein Annotations

EntrezGene:100811645	Gene3D:2.130.10.10	MapMan:26.8.1.1.2.2	MapMan:27.6.2.2	EMBL:ACUP02002140	EMBL:BT097041
UniProt:C6THC3	ncoils:Coil	InterPro:G-protein_beta_WD-40_rep	EnsemblPlantsGene:GLYMA_04G013100	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	InterPro:Gprotein_B
InterPro:Guanine_nucleotide-bd_bsu	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EnsemblPlants:KRH60850	ProteinID:KRH60850
ProteinID:KRH60850.1	PFAM:PF00400	PIRSF:PIRSF002394	PRINTS:PR00319	PRINTS:PR00320	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19850	PANTHER:PTHR19850:SF48	SMART:SM00320	SUPFAM:SSF50978
UniParc:UPI0001B16FE8	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:994284..1000318

Molecular Weight (calculated)

41024.2 Da

IEP (calculated)

7.483

GRAVY (calculated)

-0.240

Length

377 amino acids

Sequence
(BLAST)

001: MSVTELKERH LAATETVNSL RERLKERRLS LLDTDIAGYA RSQGRSPVTF GPTDLVCCRT LQGHAGKVYS LDWTSEKNRI VSASQDGRLI VWNALTSQKT
101: HAIKLPCAWV MTCAFSPTGQ SVACGGLDSV CSLFNLNSPT DRDGNLAVSR MLSGHKGYVS SCQYVPDEDT HLITGSGDQT CVLWDITTGL RTSVFGGEFQ
201: SGHTADVLSI SINGSNSRMF VSGSCDSTAR LWDTRVASRA VQTFHGHQGD VNTVKFFPDG NRFGTGSDDG TCRLFDIRTG HQLQVYHRQH GDNEAAHVTS
301: IAFSMSGRLL FAGYTNGDCY VWDTLLAKVV LNLGSLQNTH EGRISCLGLS ADGSALCTGS WDTNLKIWAF GGYRRVN

Best Arabidopsis Sequence Match ( AT4G34460.1 )
(BLAST)

001: MSVSELKERH AVATETVNNL RDQLRQRRLQ LLDTDVARYS AAQGRTRVSF GATDLVCCRT LQGHTGKVYS LDWTPERNRI VSASQDGRLI VWNALTSQKT
101: HAIKLPCAWV MTCAFSPNGQ SVACGGLDSV CSIFSLSSTA DKDGTVPVSR MLTGHRGYVS CCQYVPNEDA HLITSSGDQT CILWDVTTGL KTSVFGGEFQ
201: SGHTADVLSV SISGSNPNWF ISGSCDSTAR LWDTRAASRA VRTFHGHEGD VNTVKFFPDG YRFGTGSDDG TCRLYDIRTG HQLQVYQPHG DGENGPVTSI
301: AFSVSGRLLF AGYASNNTCY VWDTLLGEVV LDLGLQQDSH RNRISCLGLS ADGSALCTGS WDSNLKIWAF GGHRRVI

Arabidopsis Description

GB1ELK4 [Source:UniProtKB/TrEMBL;Acc:A0A178V0Y1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.