Factsheet for Os03t0669200-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 4
cytosol 2
endoplasmic reticulum 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 15069638
plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 15069638 doi

N Tanaka, M Fujita, H Handa, S Murayama, M Uemura, Y Kawamura, T Mitsui, S Mikami, Y Tozawa, T Yoshinaga, S Komatsu

Department of Molecular Genetics, National Institute of Agrobiological Sciences, 305-8602, Tsukuba, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0305500-02

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34460.1	Os03t0305500-02	AT5G10920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER93689	Sorghum	cytosol, plastid	95.26	95.26
Zm00001d033422_P001	Maize	extracellular, mitochondrion, plasma membrane	95.0	95.0
TraesCS4A01G294000.1	Wheat	cytosol, plastid	95.0	95.0
TraesCS4D01G017800.1	Wheat	cytosol, plastid	94.74	94.74
TraesCS4B01G019900.1	Wheat	cytosol, plastid	94.74	94.74
GSMUA_Achr6P31660_001	Banana	cytosol	86.05	86.28
GSMUA_Achr9P09850_001	Banana	cytosol	84.47	84.7
GSMUA_Achr10P...	Banana	cytosol	83.95	84.17
HORVU4Hr1G003110.2	Barley	cytosol	95.0	81.12
VIT_03s0063g02480.t01	Wine grape	cytosol	80.26	80.9
KRH60850	Soybean	cytosol	79.21	79.84
PGSC0003DMT400001906	Potato	cytosol	79.21	79.84
Solyc01g109560.2.1	Tomato	cytosol	78.95	79.58
KRH24483	Soybean	cytosol	78.95	79.58
KRH29472	Soybean	cytosol	78.95	79.58
KRH51535	Soybean	cytosol	78.95	79.58
AT4G34460.1	Thale cress	cytosol	76.58	77.19
CDX69061	Canola	cytosol	76.32	76.92
CDX75436	Canola	cytosol	76.32	76.92
Bra011536.1-P	Field mustard	cytosol	76.05	76.66
Bra017658.1-P	Field mustard	cytosol	75.0	75.4
Bra034628.1-P	Field mustard	cytosol	73.95	74.34
CDY46247	Canola	cytosol	67.37	73.56
CDX76284	Canola	cytosol	66.05	72.97
CDX72483	Canola	vacuole	75.26	32.32
CDY45313	Canola	endoplasmic reticulum, extracellular, vacuole	75.26	32.06

Protein Annotations

Gene3D:2.130.10.10	MapMan:26.8.1.1.2.2	MapMan:27.6.2.2	EntrezGene:4333680	ProteinID:AAP44640.1	ProteinID:ABF98102.1
EMBL:AK242811	ProteinID:BAF12777.2	ProteinID:BAS85669.1	ProteinID:CAA61889.1	ncoils:Coil	InterPro:G-protein_beta_WD-40_rep
GO:GO:0000003	GO:GO:0003674	GO:GO:0004871	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005834	GO:GO:0005886
GO:GO:0006950	GO:GO:0007154	GO:GO:0007165	GO:GO:0007186	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009605	GO:GO:0009607	GO:GO:0009653	GO:GO:0009719	GO:GO:0009723
GO:GO:0009788	GO:GO:0009791	GO:GO:0009817	GO:GO:0009845	GO:GO:0009867	GO:GO:0009987
GO:GO:0009991	GO:GO:0010118	GO:GO:0010154	GO:GO:0016020	GO:GO:0030968	GO:GO:0048364
GO:GO:0048527	GO:GO:0050832	GO:GO:0072593	GO:GO:0080008	GO:GO:1905392	GO:GO:2000280
InterPro:Gprotein_B	InterPro:Guanine_nucleotide-bd_bsu	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EMBL:JF712554
EnsemblPlantsGene:Os03g0669200	EnsemblPlants:Os03t0669200-01	PFAM:PF00400	PIRSF:PIRSF002394	PRINTS:PR00319	PRINTS:PR00320
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19850	PANTHER:PTHR19850:SF48	UniProt:Q40687
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000012B222	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_015631079.1	SEG:seg	:	:

Description

heterotrimeric G protein beta 1 subunit, heterotrimeric G protein b-subunit 1, G protein beta subunit 1Heterotrimeric G protein b-subunit, Regulation of cellular proliferation, Seed fertility (Os03t0669200-01)

Coordinates

chr3:-:26398641..26406492

Molecular Weight (calculated)

41754.0 Da

IEP (calculated)

7.444

GRAVY (calculated)

-0.292

Length

380 amino acids

Sequence
(BLAST)

001: MASVAELKEK HAAATASVNS LRERLRQRRQ MLLDTDVERY SRTQGRTPVS FNPTDLVCCR TLQGHSGKVY SLDWTPEKNW IVSASQDGRL IVWNALTSQK
101: THAIKLHCPW VMTCAFAPNG QSVACGGLDS ACSIFNLNSQ ADRDGNIPVS RILTGHKGYV SSCQYVPDQE TRLITSSGDQ TCVLWDVTTG QRISIFGGEF
201: PSGHTADVLS LSINSSNSNM FVSGSCDATV RLWDIRIASR AVRTYHGHEG DINSVKFFPD GQRFGTGSDD GTCRLFDVRT GHQLQVYSRE PDRNDNELPT
301: VTSIAFSISG RLLFAGYSNG DCYVWDTLLA EVVLNLGNLQ NSHEGRISCL GLSSDGSALC TGSWDKNLKI WAFSGHRKIV

Best Arabidopsis Sequence Match ( AT4G34460.1 )
(BLAST)

001: MSVSELKERH AVATETVNNL RDQLRQRRLQ LLDTDVARYS AAQGRTRVSF GATDLVCCRT LQGHTGKVYS LDWTPERNRI VSASQDGRLI VWNALTSQKT
101: HAIKLPCAWV MTCAFSPNGQ SVACGGLDSV CSIFSLSSTA DKDGTVPVSR MLTGHRGYVS CCQYVPNEDA HLITSSGDQT CILWDVTTGL KTSVFGGEFQ
201: SGHTADVLSV SISGSNPNWF ISGSCDSTAR LWDTRAASRA VRTFHGHEGD VNTVKFFPDG YRFGTGSDDG TCRLYDIRTG HQLQVYQPHG DGENGPVTSI
301: AFSVSGRLLF AGYASNNTCY VWDTLLGEVV LDLGLQQDSH RNRISCLGLS ADGSALCTGS WDSNLKIWAF GGHRRVI

Arabidopsis Description

GB1ELK4 [Source:UniProtKB/TrEMBL;Acc:A0A178V0Y1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.