Factsheet for HORVU4Hr1G003110.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
TargetP:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G094530.1
HORVU3Hr1G050820.11
HORVU4Hr1G054060.3
HORVU5Hr1G078800.2
HORVU7Hr1G056610.1
HORVU7Hr1G056620.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34460.1	HORVU1Hr1G094530.1	AT4G05420.1	18223036
AT4G34460.1	HORVU3Hr1G050820.11	AT4G05420.1	18223036
AT4G34460.1	HORVU7Hr1G056610.1	AT4G05420.1	18223036
AT4G34460.1	HORVU7Hr1G056620.1	AT4G05420.1	18223036
AT4G34460.1	HORVU4Hr1G054060.3	AT5G10920.1	21798944
AT4G34460.1	HORVU5Hr1G078800.2	AT5G10920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G294000.1	Wheat	cytosol, plastid	84.94	99.47
TraesCS4D01G017800.1	Wheat	cytosol, plastid	84.72	99.21
TraesCS4B01G019900.1	Wheat	cytosol, plastid	84.72	99.21
Os03t0669200-01	Rice	plasma membrane	81.12	95.0
EER93689	Sorghum	cytosol, plastid	80.0	93.68
Zm00001d033422_P001	Maize	extracellular, mitochondrion, plasma membrane	79.78	93.42
GSMUA_Achr6P31660_001	Banana	cytosol	73.03	85.75
GSMUA_Achr10P...	Banana	cytosol	71.69	84.17
GSMUA_Achr9P09850_001	Banana	cytosol	70.79	83.11
PGSC0003DMT400001906	Potato	cytosol	67.19	79.31
VIT_03s0063g02480.t01	Wine grape	cytosol	66.97	79.05
Solyc01g109560.2.1	Tomato	cytosol	66.97	79.05
KRH60850	Soybean	cytosol	66.52	78.51
KRH24483	Soybean	cytosol	66.07	77.98
KRH29472	Soybean	cytosol	66.07	77.98
KRH51535	Soybean	cytosol	66.07	77.98
CDX69061	Canola	cytosol	64.94	76.66
CDX75436	Canola	cytosol	64.94	76.66
Bra011536.1-P	Field mustard	cytosol	64.72	76.39
AT4G34460.1	Thale cress	cytosol	64.72	76.39
Bra017658.1-P	Field mustard	cytosol	63.82	75.13
Bra034628.1-P	Field mustard	cytosol	62.92	74.07
CDY46247	Canola	cytosol	57.3	73.28
CDX76284	Canola	cytosol	55.96	72.38
CDX72483	Canola	vacuole	64.94	32.66
CDY45313	Canola	endoplasmic reticulum, extracellular, vacuole	64.72	32.29

Protein Annotations

Gene3D:2.130.10.10	MapMan:26.8.1.1.2.2	MapMan:27.6.2.2	UniProt:A0A287MY94	ncoils:Coil	InterPro:G-protein_beta_WD-40_rep
GO:GO:0000003	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005834	GO:GO:0005886	GO:GO:0006950
GO:GO:0007154	GO:GO:0007165	GO:GO:0007186	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009605	GO:GO:0009607	GO:GO:0009653	GO:GO:0009719	GO:GO:0009723	GO:GO:0009788
GO:GO:0009791	GO:GO:0009817	GO:GO:0009845	GO:GO:0009867	GO:GO:0009987	GO:GO:0009991
GO:GO:0010118	GO:GO:0010154	GO:GO:0016020	GO:GO:0030968	GO:GO:0048364	GO:GO:0048527
GO:GO:0050832	GO:GO:0072593	GO:GO:0080008	GO:GO:1905392	GO:GO:2000280	InterPro:Gprotein_B
InterPro:Guanine_nucleotide-bd_bsu	EnsemblPlantsGene:HORVU4Hr1G003110	EnsemblPlants:HORVU4Hr1G003110.2	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
PFAM:PF00400	PRINTS:PR00319	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR19850	PANTHER:PTHR19850:SF48	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000B45FB0E	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:

Description

No Description!

Coordinates

chrchr4H:+:6227033..6232997

Molecular Weight (calculated)

47971.3 Da

IEP (calculated)

7.484

GRAVY (calculated)

-0.262

Length

445 amino acids

Sequence
(BLAST)

001: STPTHPTSRQ FVVAGHFASP AAAAAASDGQ LGSAIGSPPP CPEPSREQIP TAARTSSPGG AAGHLMASVA ELKEKHAAAT ASVNSLRERL RQRRQTLLDT
101: DVEKYSKAQG RTAVSFNPTD LVCCRTLQGH SGKVYSLDWT PEKNWIVSAS QDGRLIVWNA LTSQKTHAIK LHCPWVMTCA FAPNGQSVAC GGLDSACSIF
201: NLSSQVDRDG NMPVSRVLTG HKGYVSSCQY VPDQETRLIT GSGDQTCVLW DVTTGQRISI FGGEFPSGHT ADVLSLSINS LNTNMFVSGS CDTTVRLWDL
301: RIASRAVRTY HGHEGDINSV KFFPDGQRFG TGSDDGTCRL FDMRTGHQLQ VYNREPDRND NELPIVTSVA FSISGRLLFA GYSNGDCYVW DTLLAEVVLN
401: LGTLQNSHEG RISCLGLSSD GSALCTGSWD KNLKIWAFSG HRKIV

Best Arabidopsis Sequence Match ( AT4G34460.1 )
(BLAST)

001: MSVSELKERH AVATETVNNL RDQLRQRRLQ LLDTDVARYS AAQGRTRVSF GATDLVCCRT LQGHTGKVYS LDWTPERNRI VSASQDGRLI VWNALTSQKT
101: HAIKLPCAWV MTCAFSPNGQ SVACGGLDSV CSIFSLSSTA DKDGTVPVSR MLTGHRGYVS CCQYVPNEDA HLITSSGDQT CILWDVTTGL KTSVFGGEFQ
201: SGHTADVLSV SISGSNPNWF ISGSCDSTAR LWDTRAASRA VRTFHGHEGD VNTVKFFPDG YRFGTGSDDG TCRLYDIRTG HQLQVYQPHG DGENGPVTSI
301: AFSVSGRLLF AGYASNNTCY VWDTLLGEVV LDLGLQQDSH RNRISCLGLS ADGSALCTGS WDSNLKIWAF GGHRRVI

Arabidopsis Description

GB1ELK4 [Source:UniProtKB/TrEMBL;Acc:A0A178V0Y1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.