Factsheet for HORVU1Hr1G094530.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 2
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	mitochondrion, nucleus, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
TargetP:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G000250.10
HORVU0Hr1G027960.1
HORVU1Hr1G004960.1
HORVU1Hr1G018790.5
HORVU1Hr1G058250.1
HORVU1Hr1G060850.2
HORVU2Hr1G092350.1
HORVU2Hr1G126010.3
HORVU3Hr1G035450.7
HORVU3Hr1G044640.3
HORVU3Hr1G056400.2
HORVU3Hr1G084470.1
HORVU4Hr1G003110.2
HORVU4Hr1G033170.1
HORVU5Hr1G008820.2
HORVU5Hr1G057500.2
HORVU5Hr1G084160.2
HORVU5Hr1G103580.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G05420.1	HORVU3Hr1G084470.1	AT1G19750.1	20622147
AT4G05420.1	HORVU0Hr1G027960.1	AT1G65030.1	18223036
AT4G05420.1	HORVU5Hr1G008820.2	AT1G65030.1	18223036
AT4G05420.1	HORVU1Hr1G004960.1	AT1G80670.1	18223036
AT4G05420.1	HORVU3Hr1G056400.2	AT1G80670.1	18223036
AT4G05420.1	HORVU5Hr1G057500.2	AT2G19430.1	18223036
AT4G05420.1	HORVU0Hr1G000250.10	AT4G03020.1	21798944
AT4G05420.1	HORVU1Hr1G018790.5	AT4G03020.1	21798944
AT4G05420.1	HORVU1Hr1G060850.2	AT4G03020.1	21798944
AT4G05420.1	HORVU3Hr1G044640.3	AT4G10180.1	16792691
AT4G05420.1	HORVU1Hr1G058250.1	AT4G15730.1	21798944
AT4G05420.1	HORVU3Hr1G035450.7	AT4G15900.1	18223036
AT4G05420.1	HORVU4Hr1G033170.1	AT4G29830.1	18223036
AT4G05420.1	HORVU2Hr1G126010.3	AT4G31160.1	18552200
AT4G05420.1	HORVU4Hr1G003110.2	AT4G34460.1	18223036
AT4G05420.1	HORVU2Hr1G092350.1	AT4G35050.1	18223036
AT4G05420.1	HORVU5Hr1G084160.2	AT4G35050.1	18223036
AT4G05420.1	HORVU5Hr1G103580.2	AT5G46210.1	16792691
AT4G05420.1	HORVU5Hr1G103580.2	AT5G46210.1	16844902
AT4G05420.1	HORVU5Hr1G103580.2	AT5G46210.1	18223036
AT4G05420.1	HORVU5Hr1G103580.2	AT5G46210.1	18551167
AT4G21100.1	HORVU5Hr1G103580.2	AT5G46210.1	16792691

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G002300.1	Wheat	golgi, plastid	94.23	98.9
TraesCS1B01G473400.1	Wheat	nucleus	94.06	98.72
TraesCS1D01G445700.1	Wheat	unclear	93.97	98.62
Zm00001d039165_P046	Maize	nucleus	88.64	92.77
KXG22678	Sorghum	nucleus	88.29	92.75
Zm00001d009745_P023	Maize	cytosol, nucleus, plasma membrane, plastid	85.58	89.08
CDY70585	Canola	plastid	26.31	84.79
KRH43086	Soybean	nucleus	15.04	84.73
GSMUA_Achr8P07200_001	Banana	cytosol, nucleus, plasma membrane	80.59	84.66
VIT_10s0003g04360.t01	Wine grape	cytosol, nucleus, plasma membrane	79.11	83.1
KRH25071	Soybean	nucleus	43.01	82.41
AT4G05420.1	Thale cress	cytosol, nucleus, peroxisome	77.88	81.89
KRH59213	Soybean	cytosol, plasma membrane, plastid	35.66	81.6
KRH59212	Soybean	cytosol, nucleus	37.94	81.43
Solyc02g021650.2.1	Tomato	nucleus	77.8	81.28
Bra029577.1-P	Field mustard	nucleus, peroxisome, plastid	76.84	80.94
CDY68484	Canola	cytosol, endoplasmic reticulum, vacuole	37.67	80.56
CDY69930	Canola	plastid	32.87	80.17
CDY69266	Canola	nucleus	38.37	80.11
AT4G21100.1	Thale cress	nucleus	75.35	79.23
CDY57060	Canola	cytosol, nucleus, plasma membrane	74.13	76.88
CDX76416	Canola	cytosol	73.69	74.73
HORVU3Hr1G050820.11	Barley	plastid	67.66	68.37
Bra020884.1-P	Field mustard	cytosol	73.6	65.68
HORVU7Hr1G056620.1	Barley	cytosol	6.47	63.25
HORVU7Hr1G056610.1	Barley	cytosol	10.31	59.3
PGSC0003DMT400009595	Potato	nucleus	10.31	45.21
CDY50606	Canola	golgi, mitochondrion, plasma membrane	12.24	44.3
CDY54326	Canola	cytosol	6.91	34.5
HORVU6Hr1G019130.1	Barley	mitochondrion	20.8	19.4
HORVU2Hr1G055870.14	Barley	plastid	18.27	15.37

Protein Annotations

MapMan:14.6.1.3.1	MapMan:19.2.2.8.3.2	Gene3D:2.130.10.10	MapMan:26.1.1.3.2	Gene3D:3.30.980.30	UniProt:A0A287GTK3
InterPro:Cleavage/polyA-sp_fac_asu_C	ncoils:Coil	InterPro:DDB1	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
EnsemblPlantsGene:HORVU1Hr1G094530	EnsemblPlants:HORVU1Hr1G094530.1	InterPro:IPR015943	PFAM:PF03178	PFAM:PF10433	PANTHER:PTHR10644
PANTHER:PTHR10644:SF3	InterPro:Quinoprotein_ADH-like_supfam	SUPFAM:SSF50998	UniParc:UPI000B468E2F	InterPro:WD40/YVTN_repeat-like_dom_sf	SEG:seg

Description

No Description!

Coordinates

chrchr1H:+:555608835..555618502

Molecular Weight (calculated)

127767.0 Da

IEP (calculated)

5.597

GRAVY (calculated)

-0.135

Length

1144 amino acids

Sequence
(BLAST)

0001: GPEGNAAHFT RGSSAVKKRG SPAAVQRISL SLSLHRSTEP RTLLLLRRRR RTAAMSTWNY VVTAHKPTSV SHSCVGNFTG PHQLNLIVAK CTRIEIHLLT
0101: PQGLQPMLDV PIYGRIATIE LFRPHNEAQD FLFIATERYK FCVLQWDAEK SELLTRSMGD VSDRIGRPTD NGQIGIIDPD CRLIGLHLYD GLFKVIPFDN
0201: KGQLKEAFNI RLEELQVLDI KFLYGCLRPT IVVLYQDNKD ARHVKTYEVA LKEKDFVEGP WSQNNLDNGA GLLIPVPAPL GGVIIIGEET IVYCNANSTF
0301: RAIPIKQSIT RAYGRVDPDG SRYLLGDNSG ILHLLVLTQE RERVTGLKIE HLGETSVASS ISYLDNGVVY VGSRFGDSQL VKLNLQPDAT GSFVEILERY
0401: VNLGPIVDFC VVDLDRQGQG QVVTCSGAFK DGSIRVVRNG IGINEQASVE LQGIKGLWSL KSSFSDLYDM YLVVSFISET RFLAMNMEDE LEEIEIEGFD
0501: AQIQTLFCQN AINDLLIQVT ANSVRLVSCT SRELVDQWNA PEGFSVNVAS ANASQVLLAT GGGHLVYLEI RDAKLVEVKH AQLEHEISCV DLNPVGENPQ
0601: YSSLAAIGMW TDISVSIFSL PDLELIRKEN LGGEIVPRSV LMCTLEGISY LLCALGDGHL FSFLLNASTG ELTDRKKVSL GTQPISLRTF SSKGTTHVFA
0701: SSDRPTVIYS SNKKLLYSNV NLKEVNHMCP FNTAAFPDSL AIAKEGELSI GTIDDIQKLH IRTIPLNEQA RRICHQEQSR TLAFCSFKYT QNSMEESEAH
0801: FIRLMDHQTF EFLSTHPLDQ YECGCSMISC SFSDDNNFYY CVGTAYVLPE ENEPTKGRIL VFAVEDGRLQ LIVEKETKGA VYSLNAFNGK LLAAINQKIQ
0901: LYKWMTREDG SHELQSECGH HGHILALYTQ TRGDFIVVGD LMKSISLLVY KHEESAIEEL ARDYNANWMT AVEMIDDDIY VGAENSYNLF TVRKNSDAAT
1001: DEERGRLEVV GEYHLGEFVN RFRHGSLVMR LPDSEMGQIP TVIFGTINGV IGIIASLPHD HYVFLEKLQA TLVKFIKGVG SLSHEQWRSF HNDKKTSEAR
1101: NFLDGDLIES FLDLNRSKME EVAKAMAVPV EELSKRVEEL TRLH

Best Arabidopsis Sequence Match ( AT4G05420.1 )
(BLAST)

0001: MSSWNYVVTA HKPTSVTHSC VGNFTSPQEL NLIVAKCTRI EIHLLTPQGL QPMLDVPIYG RIATLELFRP HGEAQDFLFI ATERYKFCVL QWDPESSELI
0101: TRAMGDVSDR IGRPTDNGQI GIIDPDCRLI GLHLYDGLFK VIPFDNKGQL KEAFNIRLEE LQVLDIKFLF GCAKPTIAVL YQDNKDARHV KTYEVSLKDK
0201: DFVEGPWSQN SLDNGADLLI PVPPPLCGVL IIGEETIVYC SASAFKAIPI RPSITKAYGR VDVDGSRYLL GDHAGMIHLL VITHEKEKVT GLKIELLGET
0301: SIASTISYLD NAVVFVGSSY GDSQLVKLNL HPDAKGSYVE VLERYINLGP IVDFCVVDLE RQGQGQVVTC SGAFKDGSLR VVRNGIGINE QASVELQGIK
0401: GMWSLKSSID EAFDTFLVVS FISETRILAM NLEDELEETE IEGFLSQVQT LFCHDAVYNQ LVQVTSNSVR LVSSTTRELR DEWHAPAGFT VNVATANASQ
0501: VLLATGGGHL VYLEIGDGKL TEVQHALLEY EVSCLDINPI GDNPNYSQLA AVGMWTDISV RIFSLPELTL ITKEQLGGEI IPRSVLLCAF EGISYLLCAL
0601: GDGHLLNFQM DTTTGQLKDR KKVSLGTQPI TLRTFSSKSA THVFAASDRP TVIYSSNKKL LYSNVNLKEV SHMCPFNSAA FPDSLAIARE GELTIGTIDD
0701: IQKLHIRTIP LGEHARRICH QEQTRTFGIC SLGNQSNSEE SEMHFVRLLD DQTFEFMSTY PLDSFEYGCS ILSCSFTEDK NVYYCVGTAY VLPEENEPTK
0801: GRILVFIVED GRLQLIAEKE TKGAVYSLNA FNGKLLAAIN QKIQLYKWML RDDGTRELQS ECGHHGHILA LYVQTRGDFI VVGDLMKSIS LLLYKHEEGA
0901: IEERARDYNA NWMSAVEILD DDIYLGAENN FNLLTVKKNS EGATDEERGR LEVVGEYHLG EFVNRFRHGS LVMRLPDSEI GQIPTVIFGT VNGVIGVIAS
1001: LPQEQYTFLE KLQSSLRKVI KGVGGLSHEQ WRSFNNEKRT AEARNFLDGD LIESFLDLSR NKMEDISKSM NVQVEELCKR VEELTRLH

Arabidopsis Description

DDB1ADDB1A [Source:UniProtKB/TrEMBL;Acc:A0A178UYD4]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.