Factsheet for HORVU1Hr1G004960.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
TargetP:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G094530.1
HORVU3Hr1G050820.11
HORVU7Hr1G056610.1
HORVU7Hr1G056620.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G80670.1	HORVU1Hr1G094530.1	AT4G05420.1	18223036
AT1G80670.1	HORVU3Hr1G050820.11	AT4G05420.1	18223036
AT1G80670.1	HORVU7Hr1G056610.1	AT4G05420.1	18223036
AT1G80670.1	HORVU7Hr1G056620.1	AT4G05420.1	18223036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G034200.1	Wheat	plastid	81.42	97.08
TraesCS1B01G041300.1	Wheat	plastid	81.17	96.79
TraesCS1A01G033000.1	Wheat	plastid	81.17	96.79
Os08t0176800-01	Rice	plastid	76.53	91.52
KXG24577	Sorghum	cytosol, plastid	74.08	84.4
VIT_12s0055g00900.t01	Wine grape	cytosol, plastid	70.66	82.57
KRH75181	Soybean	nucleus	68.22	80.4
KRH71020	Soybean	cytosol, plastid	68.22	80.4
VIT_09s0002g09150.t01	Wine grape	cytosol, plastid	67.24	79.71
AT1G80670.1	Thale cress	cytosol, plastid	67.73	79.37
CDY66129	Canola	plastid	66.5	78.61
CDY53220	Canola	plastid	66.5	78.61
Bra008447.1-P	Field mustard	plastid	66.5	78.61
Bra003577.1-P	Field mustard	cytosol	52.57	77.9
CDX67958	Canola	cytosol, plastid	65.28	77.17
Solyc10g047000.1.1	Tomato	nucleus	65.77	76.86
CDY39955	Canola	plastid	65.04	76.44
CDX87331	Canola	plastid	65.04	76.44
Bra035162.1-P	Field mustard	plastid	65.04	76.44
GSMUA_Achr6P30400_001	Banana	cytosol, plastid	68.7	75.95
GSMUA_Achr6P30360_001	Banana	cytosol, plastid	68.22	75.41
CDX79362	Canola	cytosol, plastid	61.61	75.0
HORVU3Hr1G056400.2	Barley	cytosol, plastid	66.99	68.67
AT1G15850.1	Thale cress	plastid	22.98	67.14
HORVU4Hr1G067810.1	Barley	plastid	29.1	29.75
HORVU5Hr1G096830.5	Barley	mitochondrion	19.8	25.16

Protein Annotations

Gene3D:2.130.10.10	MapMan:23.5.1.1.1.10	UniProt:A0A287EII4	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:HORVU1Hr1G004960	EnsemblPlants:HORVU1Hr1G004960.1	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR10971	PANTHER:PTHR10971:SF16
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000B463509	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrchr1H:+:10739577..10746629

Molecular Weight (calculated)

45330.3 Da

IEP (calculated)

9.407

GRAVY (calculated)

-0.481

Length

409 amino acids

Sequence
(BLAST)

001: QRASPATRRK PIHISSHRPF VSYFISSPPT RLENLPPLRH SPLAAAAGSP PSVRPAVRFW RIAEGEMATL TSLTSNANPN KSFEVLPNPG DSLSSLSFSP
101: KSNLLVATSW DNQVRCWEIG NGNSQPKASI SHDQPVLCSA WKDDGTTVFS GGCDKQVKMW PLLSGGQAQT VAMHDAPVKE VAWISQMNLL VSGSWDKTLR
201: YWDTRQANPA HVQQLPDRCY ALAVNYPLMI VGTADRNIVI FNLQNPQTEF KRIQSPLKYQ TRCVAAFPDQ QGFLVGSIEG RVGVHHIDDS QQSKNFTFKC
301: HREGNDIFSV NSLNFHPVHH TFATAGSDGA FNFWDKDSKQ RLKAFSRCPQ PIPCSSFNND GSIFAYGVCY DWSRGAENHN PANAKTSIYL HSPQEAEVKG
401: KPRIATGRK

Best Arabidopsis Sequence Match ( AT1G80670.1 )
(BLAST)

001: MATFGAPATA NSNPNKSYEV TPSPADSISS LSFSPRADIL VATSWDNQVR CWEISRSGAS LASAPKASIS HDQPVLCSAW KDDGTTVFSG GCDKQAKMWP
101: LLSGGQPVTV AMHEGPIAAM AWIPGMNLLA TGSWDKTLKY WDTRQQNPVH TQQLPDKCYT LSVKHPLMVV GTADRNLIVF NLQNPQTEFK RIQSPLKYQT
201: RCVTAFPDQQ GFLVGSIEGR VGVHHLDDSQ QSKNFTFKCH RDGNDIYSVN SLNFHPVHGT FATAGSDGAF NFWDKDSKQR LKAMSRCNQP IPCSSFNHDG
301: SIYAYAACYD WSKGAENHNP ATAKSSIFLH LPQESEVKAK PRVGATGRK

Arabidopsis Description

RAE1Protein RAE1 [Source:UniProtKB/Swiss-Prot;Acc:Q38942]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.